myRT

myRT report for GCA_003439865.1_ASM343986v1

Download annotations/find similar RTs

Seq: QSWC01000011.1 Bacteroides ovatus strain OF05-12AC OF05-12AC.Scaf11, whole genome shotgun sequence (184066 bp)
Overview 1 RT 1: 25751-30940 bp Neighborhood of RT #1 [25751, 30954] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 25751-26065 bp Feature: domain Description: DUF3876 Location: 25805-26054 bp Feature: domain Description: DUF3876 Location: 25805-26054 bp Feature: gene Location: 26080-27774 bp Feature: domain Description: Bac_Flav_CT_G Location: 26200-27766 bp Feature: domain Description: Bac_Flav_CT_G Location: 26200-27766 bp Feature: gene Location: 27771-29432 bp Feature: RT Description: RVT_N Location: 27825-28068 bp Feature: RT Description: RVT_N Location: 27825-28068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28113-28761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 1 3-28761 bp Feature: domain Description: GIIM Note: maturase Location: 28815-29046 bp Feature: domain Description: GIIM Note: maturase Location: 2881 5-29046 bp Feature: gene Location: 29514-29894 bp Feature: gene Location: 30016-30954 bp Feature: domain Description: Bac_Flav_CT_G Location: 30019-30940 bp Feature: domain Description: Bac_Flav_CT_G Location: 3001 9-30940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSWC01000012.1 Bacteroides ovatus strain OF05-12AC OF05-12AC.Scaf12, whole genome shotgun sequence (183838 bp)
Overview 1 RT 1: 103358-115399 bp Neighborhood of RT #1 [103358, 115515] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 103358-103492 bp Feature: gene Location: 104114-106321 bp Feature: gene Location: 106527-107657 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106848-107391 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106848-107391 bp Feature: gene Location: 107659-113616 bp Feature: domain Description: DUF4011 Location: 108889-109402 bp Feature: domain Description: DUF4011 Location: 108889-109402 bp Feature: domain Description: DEXXQc_SF1 Location: 109741-110572 bp Feature: domain Description: DEXXQc_SF1 Location: 109741-110572 bp Feature: domain Description: DEXXQc_SF1 Location: 111169-111928 bp Feature: domain Description: DEXXQc_SF1 Location: 111169-11192 8 bp Feature: domain Description: TIGR00376 Location: 112057-112447 bp Feature: domain Description: TIGR00376 Location: 112 057-112 447 bp Feature: domain Description: MTES_1575 Location: 112600-112885 bp Feature: domain Description: MTES_1575 Location: 112 600-112 885 bp Feature: domain Description: DUF3320 Location: 113125-113266 bp Feature: domain Description: DUF332 0 Location: 11312 5-1132 66 bp Feature: gene Location: 113713-115515 bp Feature: domain Description: rpsA Location: 113782-115399 bp Feature: domain Description: rpsA Location: 113782 -115399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSWC01000006.1 Bacteroides ovatus strain OF05-12AC OF05-12AC.Scaf6, whole genome shotgun sequence (298678 bp)
Overview 1 RT 1: 44018-49340 bp 2 RT 2: 194128-197631 bp Neighborhood of RT #1 [44018, 53461] RVT-DGRs Laminin_G_3 Laminin_G_3 Neighborhood of RT #2 [194128, 197660] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 44018-44260 bp Feature: gene Location: 44440-44925 bp Feature: gene Location: 44922-46226 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45135-45729 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4513 5-45729 bp Feature: gene Location: 46328-46546 bp Feature: gene Location: 46742-53461 bp Feature: domain Description: Laminin_G_3 Location: 48185-48263 bp Feature: domain Description: Laminin_G_3 Location: 48185-48263 bp Feature: domain Description: Laminin_G_3 Location: 48914-49340 bp Feature: domain Description: Laminin_G_3 Location: 48914-493 40 bp Feature: gene Location: 194128-194421 bp Feature: gene Location: 194620-194898 bp Feature: gene Location: 194861-196282 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 195236-195938 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19523 6-19593 8 bp Feature: gene Location: 196297-196704 bp Feature: domain Description: Avd_like Location: 196330-196639 bp Feature: domain Description: Avd_like Location: 1963 3 0-19663 9 bp Feature: gene Location: 196851-197660 bp Feature: domain Description: DUF1566 Location: 197382-197631 bp Feature: domain Description: DUF1566 Location: 1973 82-19763 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385), Avd_like (cd16376), DUF1566 (pfam07603)