myRT

myRT report for GCA_003444275.1_ASM344427v1

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Seq: DLUY01000455.1 TPA_asm: Myxococcales bacterium isolate UBA9594 contig_140126, whole genome shotgun sequence (5690 bp)
Overview 1 RT 1: 2-3782 bp Neighborhood of RT #1 [2, 3782] RVT-Retrons HEAT_2 HEAT_2 Aldo_ket_red Feature: gene Location: 2-799 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 671-797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 671 -797 bp Feature: gene Location: 944-3373 bp Feature: domain Description: HEAT_2 Location: 1040-1286 bp Feature: domain Description: HEAT_2 Location: 1 040-1 286 bp Feature: domain Description: HEAT_2 Location: 1568-1781 bp Feature: domain Description: HEAT_2 Location: 1 568-1 781 bp Feature: domain Description: Aldo_ket_red Location: 2582-3314 bp Feature: domain Description: Aldo_ket_red Location: 2582-331 4 bp Feature: gene Location: 3501-3782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: DLUY01001219.1 TPA_asm: Myxococcales bacterium isolate UBA9594 contig_168500, whole genome shotgun sequence (7299 bp)
Overview 1 RT 1: 2-7263 bp Neighborhood of RT #1 [2, 7298] PRK05437 OEP OEP RVT-Retrons RVT-Retrons ligand_gated_channel ligand_gated_channel Feature: gene Location: 2-805 bp Feature: domain Description: PRK05437 Location: 86-785 bp Feature: domain Description: PRK05437 Location: 86-785 bp Feature: gene Location: 986-2617 bp Feature: domain Description: OEP Location: 1166-1910 bp Feature: domain Description: OEP Location: 1166-1910 bp Feature: domain Description: OEP Location: 1985-2534 bp Feature: domain Description: OEP Location: 1985-2 534 bp Feature: gene Location: 2665-4818 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2875-3496 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 875-3496 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3919-4516 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3919-4516 bp Feature: gene Location: 4971-7298 bp Feature: domain Description: ligand_gated_channel Location: 5511-6066 bp Feature: domain Description: ligand_gated_channel Location: 5511-6066 bp Feature: domain Description: ligand_gated_channel Location: 6528-7263 bp Feature: domain Description: ligand_gated_channel Location: 652 8-72 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK05437 (isopentenyl pyrophosphate isomerase; Provisional), OEP (pfam02321)

Seq: DLUY01001011.1 TPA_asm: Myxococcales bacterium isolate UBA9594 contig_305773, whole genome shotgun sequence (3431 bp)
Overview 1 RT 1: 2-3412 bp Neighborhood of RT #1 [2, 3429] SpoIID RVT-Retrons WGR_MMR_like Feature: gene Location: 2-1159 bp Feature: domain Description: SpoIID Location: 626-1121 bp Feature: domain Description: SpoIID Location: 626-1121 bp Feature: gene Location: 1280-2620 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1754-2372 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1754-23 72 bp Feature: gene Location: 2656-3429 bp Feature: domain Description: WGR_MMR_like Location: 3268-3412 bp Feature: domain Description: WGR_MMR_like Location: 3 268-3 412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SpoIID (pfam08486), WGR_MMR_like (cd07996)

Seq: DLUY01000955.1 TPA_asm: Myxococcales bacterium isolate UBA9594 contig_40140, whole genome shotgun sequence (4114 bp)
Overview 1 RT 1: 278-4112 bp Neighborhood of RT #1 [278, 4112] SWIM RVT-Retrons Feature: gene Location: 278-424 bp Feature: gene Location: 1974-2102 bp Feature: domain Description: SWIM Location: 1995-2076 bp Feature: domain Description: SWIM Location: 1995-2076 bp Feature: gene Location: 2113-3522 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2674-3283 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2674 -3283 bp Feature: gene Location: 3726-4112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons

Seq: DLUY01001033.1 TPA_asm: Myxococcales bacterium isolate UBA9594 contig_5801, whole genome shotgun sequence (6813 bp)
Overview 1 RT 1: 1467-6678 bp Neighborhood of RT #1 [1467, 6686] PAS_8 BaeS RVT-GII Serpin Feature: gene Location: 1467-2960 bp Feature: domain Description: PAS_8 Location: 1560-1668 bp Feature: domain Description: PAS_8 Location: 15 60-1668 bp Feature: domain Description: BaeS Location: 2028-2907 bp Feature: domain Description: BaeS Location: 2028-2907 bp Feature: gene Location: 3008-3343 bp Feature: gene Location: 3750-4724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4074-4689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4074-4689 bp Feature: gene Location: 5439-6686 bp Feature: domain Description: Serpin Location: 5580-6678 bp Feature: domain Description: Serpin Location: 5 5 80-6678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS_8 (pfam13188), BaeS (COG0642), RVT-GII, Serpin (pfam00079)