myRT

myRT report for GCA_003444555.1_ASM344455v1

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Seq: DLUV01000555.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_1643, whole genome shotgun sequence (7138 bp)
Overview 1 RT 1: 1106-5405 bp Neighborhood of RT #1 [1106, 5405] NYN Rnc RVT-Retrons TPR Feature: gene Location: 1106-1876 bp Feature: domain Description: NYN Location: 1166-1559 bp Feature: domain Description: NYN Location: 1 1 66-1 559 bp Feature: gene Location: 1980-2693 bp Feature: domain Description: Rnc Location: 2025-2679 bp Feature: domain Description: Rnc Location: 2025-2679 bp Feature: gene Location: 2808-4220 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3360-3978 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3360-3978 bp Feature: gene Location: 4561-4908 bp Feature: domain Description: TPR Location: 4567-4726 bp Feature: domain Description: TPR Location: 4567-4726 bp Feature: gene Location: 4941-5405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NYN (pfam01936), Rnc (COG0571), RVT-Retrons, TPR (smart00028)

Seq: DLUV01000616.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_17716, whole genome shotgun sequence (3309 bp)
Overview 1 RT 1: 3-3014 bp Neighborhood of RT #1 [3, 3112] RVT-GII RVT-GII RVT-GII KOG4768 Feature: gene Location: 3-128 bp Feature: gene Location: 507-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510-855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510-855 bp Feature: gene Location: 906-1112 bp Feature: gene Location: 1232-1828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1622-1802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 2 -1802 bp Feature: gene Location: 1903-2319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1906-2311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1906-2 311 bp Feature: gene Location: 2345-3112 bp Feature: domain Description: KOG4768 Location: 2348-3014 bp Feature: domain Description: KOG4768 Location: 2 348-3014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: DLUV01000369.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_1792, whole genome shotgun sequence (8497 bp)
Overview 1 RT 1: 3-4621 bp Neighborhood of RT #1 [3, 4701] McrA RVT_N RVT-GII YjbI Pentapeptide MltA Feature: gene Location: 3-347 bp Feature: domain Description: McrA Location: 36-303 bp Feature: domain Description: McrA Location: 3 6-3 03 bp Feature: gene Location: 731-1681 bp Feature: domain Description: RVT_N Location: 767-1013 bp Feature: domain Description: RVT_N Location: 767-1013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1055-1652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1055-1652 bp Feature: gene Location: 2682-3311 bp Feature: domain Description: YjbI Location: 2724-3057 bp Feature: domain Description: YjbI Location: 2724-3 057 bp Feature: domain Description: Pentapeptide Location: 3078-3183 bp Feature: domain Description: Pentapeptide Location: 3 078-3 183 bp Feature: gene Location: 3544-4701 bp Feature: domain Description: MltA Location: 3760-4621 bp Feature: domain Description: MltA Location: 3 760-4621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT McrA (COG4058), RVT_N (pfam13655), RVT-GII, YjbI (COG2346), Pentapeptide (pfam00805), MltA (smart00925)

Seq: DLUV01000202.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_2051, whole genome shotgun sequence (31527 bp)
Overview 1 RT 1: 6490-13805 bp Neighborhood of RT #1 [6490, 13805] InsQ InsQ RVT_N RVT-GII GIIM McrA TPR DUF563 Feature: gene Location: 6490-7764 bp Feature: domain Description: InsQ Location: 6496-7663 bp Feature: domain Description: InsQ Location: 64 96-7663 bp Feature: gene Location: 7836-8465 bp Feature: domain Description: InsQ Location: 7842-8352 bp Feature: domain Description: InsQ Location: 784 2-8352 bp Feature: gene Location: 8480-10225 bp Feature: domain Description: RVT_N Location: 8516-8762 bp Feature: domain Description: RVT_N Location: 8516-8762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8804-9437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8804 -94 37 bp Feature: domain Description: GIIM Note: maturase Location: 9545-9779 bp Feature: domain Description: GIIM Note: maturase Location: 954 5-9779 bp Feature: domain Description: McrA Location: 9857-10127 bp Feature: domain Description: McrA Location: 9857-10127 bp Feature: gene Location: 10931-13024 bp Feature: domain Description: TPR Location: 10943-11648 bp Feature: domain Description: TPR Location: 1094 3-1164 8 bp Feature: domain Description: DUF563 Location: 12296-12908 bp Feature: domain Description: DUF563 Location: 12296-12908 bp Feature: gene Location: 13230-13805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), TPR (smart00028), DUF563 (pfam04577)

Seq: DLUV01000576.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_2645, whole genome shotgun sequence (10461 bp)
Overview 1 RT 1: 2-2877 bp Neighborhood of RT #1 [2, 2877] RVT_N RVT-GII GIIM McrA COG2018 Feature: gene Location: 2-1615 bp Feature: domain Description: RVT_N Location: 5-209 bp Feature: domain Description: RVT_N Location: 5 -209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251-887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 1-887 bp Feature: domain Description: GIIM Note: maturase Location: 986-1220 bp Feature: domain Description: GIIM Note: maturase Location: 986-1220 bp Feature: domain Description: McrA Location: 1298-1607 bp Feature: domain Description: McrA Location: 1298-1607 bp Feature: gene Location: 1761-2087 bp Feature: domain Description: COG2018 Location: 1773-2079 bp Feature: domain Description: COG2018 Location: 1773-2079 bp Feature: gene Location: 2251-2877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), COG2018 (Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family )

Seq: DLUV01000700.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_2702, whole genome shotgun sequence (13043 bp)
Overview 1 RT 1: 6178-12955 bp Neighborhood of RT #1 [6178, 13041] NERD DEXQc_UvrD DEXQc_UvrD RVT-UNC COG2907 COG1233 Feature: gene Location: 6178-6597 bp Feature: gene Location: 6748-8310 bp Feature: domain Description: NERD Location: 6796-7132 bp Feature: domain Description: NERD Location: 6 796 -7132 bp Feature: domain Description: DEXQc_UvrD Location: 7396-7507 bp Feature: domain Description: DEXQc_UvrD Location: 7396 -7507 bp Feature: domain Description: DEXQc_UvrD Location: 7636-7762 bp Feature: domain Description: DEXQc_UvrD Location: 76 36 -776 2 bp Feature: gene Location: 8327-10039 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 8549-9209 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 8549-9209 bp Feature: gene Location: 10104-11318 bp Feature: domain Description: COG2907 Location: 10107-11307 bp Feature: domain Description: COG2907 Location: 10107-11307 bp Feature: gene Location: 11614-13041 bp Feature: domain Description: COG1233 Location: 11719-12955 bp Feature: domain Description: COG1233 Location: 11719-12955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), DEXQc_UvrD (cd17932), RVT-UG19/RVT-UG9/RVT-UG7(RVT-UNC), COG2907 (Predicted NAD/FAD-binding protein ), COG1233 (Phytoene dehydrogenase-related protein )

Seq: DLUV01000086.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_3918, whole genome shotgun sequence (9226 bp)
Overview 1 RT 1: 2309-7078 bp Neighborhood of RT #1 [2309, 7092] PRK02534 InsQ RVT_N RVT-GII GIIM Y1_Tnp Feature: gene Location: 2309-3262 bp Feature: domain Description: PRK02534 Location: 2312-3248 bp Feature: domain Description: PRK02534 Location: 2312-3248 bp Feature: gene Location: 3268-4512 bp Feature: domain Description: InsQ Location: 3490-4351 bp Feature: domain Description: InsQ Location: 3490-4351 bp Feature: gene Location: 4666-6198 bp Feature: domain Description: RVT_N Location: 4702-4948 bp Feature: domain Description: RVT_N Location: 47 02-4948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4990-5683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4990-5683 bp Feature: domain Description: GIIM Note: maturase Location: 5782-6016 bp Feature: domain Description: GIIM Note: maturase Location: 57 82-6016 bp Feature: gene Location: 6531-6683 bp Feature: gene Location: 6871-7092 bp Feature: domain Description: Y1_Tnp Location: 6874-7078 bp Feature: domain Description: Y1_Tnp Location: 687 4-7 07 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02534 (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Y1_Tnp (pfam01797)

Seq: DLUV01000244.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_6470, whole genome shotgun sequence (9704 bp)
Overview 1 RT 1: 434-3726 bp Neighborhood of RT #1 [434, 3731] InsQ RVT_N RVT-GII GIIM McrA PRK09974 Feature: gene Location: 434-946 bp Feature: domain Description: InsQ Location: 497-860 bp Feature: domain Description: InsQ Location: 497-8 60 bp Feature: gene Location: 1140-1373 bp Feature: gene Location: 1462-3039 bp Feature: domain Description: RVT_N Location: 1498-1744 bp Feature: domain Description: RVT_N Location: 1498 -1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1795-2389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1795-238 9 bp Feature: domain Description: GIIM Note: maturase Location: 2446-2608 bp Feature: domain Description: GIIM Note: maturase Location: 2446-2608 bp Feature: domain Description: McrA Location: 2653-2971 bp Feature: domain Description: McrA Location: 2653-2971 bp Feature: gene Location: 3102-3245 bp Feature: gene Location: 3405-3731 bp Feature: domain Description: PRK09974 Location: 3582-3726 bp Feature: domain Description: PRK09974 Location: 358 2-3726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK09974 (type II toxin-antitoxin system PrlF family antitoxin)

Seq: DLUV01000167.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_67, whole genome shotgun sequence (32748 bp)
Overview 1 RT 1: 16874-21374 bp Neighborhood of RT #1 [16874, 21374] RVT_N RVT-GII GIIM XisI-like Feature: gene Location: 16874-17515 bp Feature: gene Location: 17649-17888 bp Feature: gene Location: 18316-19683 bp Feature: domain Description: RVT_N Location: 18370-18616 bp Feature: domain Description: RVT_N Location: 18370-18616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18664-19345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18664-19 345 bp Feature: domain Description: GIIM Note: maturase Location: 19396-19612 bp Feature: domain Description: GIIM Note: maturase Location: 19 39 6-19 612 bp Feature: gene Location: 20621-20755 bp Feature: domain Description: XisI-like Location: 20639-20750 bp Feature: domain Description: XisI-like Location: 20639 -20750 bp Feature: gene Location: 20829-21374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), XisI-like (cl07462)

Seq: DLUV01000252.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_716, whole genome shotgun sequence (86046 bp)
Overview 1 RT 1: 22305-26964 bp Neighborhood of RT #1 [22305, 26964] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 22305-23063 bp Feature: gene Location: 23199-23657 bp Feature: gene Location: 23784-25445 bp Feature: domain Description: RVT_N Location: 23835-24078 bp Feature: domain Description: RVT_N Location: 23835-24078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24120-24741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24120-24741 bp Feature: domain Description: YkfC Location: 24924-25053 bp Feature: domain Description: YkfC Location: 24924-25053 bp Feature: domain Description: HNHc Note: nucleases Location: 25260-25416 bp Feature: domain Description: HNHc Note: nucleases Location: 25260-25416 bp Feature: gene Location: 25549-26583 bp Feature: gene Location: 26779-26964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: DLUV01000077.1 TPA_asm: Cyanobacteria bacterium UBA8553 contig_921, whole genome shotgun sequence (34388 bp)
Overview 1 RT 1: 7299-12844 bp Neighborhood of RT #1 [7299, 12844] PRK05764 InsQ RVT_N RVT-GII GIIM McrA Feature: gene Location: 7299-8471 bp Feature: domain Description: PRK05764 Location: 7302-8457 bp Feature: domain Description: PRK05764 Location: 7302-8457 bp Feature: gene Location: 8639-9874 bp Feature: domain Description: InsQ Location: 8849-9794 bp Feature: domain Description: InsQ Location: 8849-9794 bp Feature: gene Location: 9871-11574 bp Feature: domain Description: RVT_N Location: 9898-10144 bp Feature: domain Description: RVT_N Location: 9898-10144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10186-10846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10186-10846 bp Feature: domain Description: GIIM Note: maturase Location: 10924-11158 bp Feature: domain Description: GIIM Note: maturase Location: 10924-11 158 bp Feature: domain Description: McrA Location: 11257-11533 bp Feature: domain Description: McrA Location: 11 257-11 533 bp Feature: gene Location: 11620-11811 bp Feature: gene Location: 12458-12844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05764 (aspartate aminotransferase; Provisional), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)