myRT

myRT report for GCA_003448965.1_ASM344896v1

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Seq: QRGC01000110.1 Oceanicella sp. SM1341 SM1341_scaffold111, whole genome shotgun sequence (544 bp)
Overview 1 RT 1: 2-539 bp Neighborhood of RT #1 [2, 541] RVT-GII Feature: gene Location: 2-541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7-539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QRGC01000030.1 Oceanicella sp. SM1341 SM1341_scaffold30, whole genome shotgun sequence (82969 bp)
Overview 1 RT 1: 15114-20467 bp Neighborhood of RT #1 [15114, 20469] PRK13874 other_trbK RVT-GII GIIM PRK13875 PRK13872 Feature: gene Location: 15114-15875 bp Feature: domain Description: PRK13874 Location: 15144-15819 bp Feature: domain Description: PRK13874 Location: 15144-15819 bp Feature: gene Location: 15886-16155 bp Feature: domain Description: other_trbK Location: 15907-16135 bp Feature: domain Description: other_trbK Location: 15907-16135 bp Feature: gene Location: 16290-17864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16641-17358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16641-17358 bp Feature: domain Description: GIIM Note: maturase Location: 17436-17667 bp Feature: domain Description: GIIM Note: maturase Location: 17436-17667 bp Feature: gene Location: 18455-19786 bp Feature: domain Description: PRK13875 Location: 18458-19784 bp Feature: domain Description: PRK13875 Location: 18458-19784 bp Feature: gene Location: 19789-20469 bp Feature: domain Description: PRK13872 Location: 19792-20467 bp Feature: domain Description: PRK13872 Location: 19792 -2 0467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13874 (conjugal transfer protein TrbJ; Provisional), other_trbK (TIGR04360), RVT-GII, GIIM (pfam08388), PRK13875 (conjugal transfer protein TrbL; Provisional), PRK13872 (conjugal transfer protein TrbF; Provisional)

Seq: QRGC01000074.1 Oceanicella sp. SM1341 SM1341_scaffold75, whole genome shotgun sequence (1706 bp)
Overview 1 RT 1: 81-1472 bp Neighborhood of RT #1 [81, 1705] RVT-UNC Feature: gene Location: 81-290 bp Feature: gene Location: 680-1705 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 812-1472 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 812-1472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-DGRs(RVT-UNC)

Seq: QRGC01000097.1 Oceanicella sp. SM1341 SM1341_scaffold98, whole genome shotgun sequence (782 bp)
Overview 1 RT 1: 3-546 bp Neighborhood of RT #1 [3, 746] RVT-CRISPR-like RT_nLTR_like Feature: gene Location: 3-746 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 48-282 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4 8-282 bp Feature: domain Description: RT_nLTR_like Location: 300-546 bp Feature: domain Description: RT_nLTR_like Location: 300-54 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RT_nLTR_like (cd01650)