myRT

myRT report for GCA_003449275.1_ASM344927v1

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Seq: DMHZ01000009.1 TPA_asm: Gammaproteobacteria bacterium isolate UBA10656 contig_255, whole genome shotgun sequence (6053 bp)
Overview 1 RT 1: 265-5912 bp Neighborhood of RT #1 [265, 5912] AtoC PRK11360 RVT_N RVT-GII GIIM McrA Feature: gene Location: 265-1641 bp Feature: domain Description: AtoC Location: 277-1630 bp Feature: domain Description: AtoC Location: 277-1 630 bp Feature: gene Location: 1703-2956 bp Feature: domain Description: PRK11360 Location: 1952-2933 bp Feature: domain Description: PRK1 1 360 Location: 1 952-2933 bp Feature: gene Location: 2953-4683 bp Feature: domain Description: RVT_N Location: 3034-3274 bp Feature: domain Description: RVT_N Location: 3034-3274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3991 bp Feature: domain Description: GIIM Note: maturase Location: 4054-4288 bp Feature: domain Description: GIIM Note: maturase Location: 4054-4288 bp Feature: domain Description: McrA Location: 4483-4660 bp Feature: domain Description: McrA Location: 4483-4660 bp Feature: gene Location: 5256-5912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoC (COG2204), PRK11360 (two-component system sensor histidine kinase AtoS), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DMHZ01000746.1 TPA_asm: Gammaproteobacteria bacterium isolate UBA10656 contig_2821, whole genome shotgun sequence (5656 bp)
Overview 1 RT 1: 2-3334 bp Neighborhood of RT #1 [2, 3489] RVT-UG4 7WD40 WD40 Feature: gene Location: 2-157 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 11-158 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 11-158 bp Feature: gene Location: 847-1479 bp Feature: gene Location: 2563-3489 bp Feature: domain Description: 7WD40 Location: 2587-3127 bp Feature: domain Description: 7WD40 Location: 2 587-312 7 bp Feature: domain Description: WD40 Location: 3217-3334 bp Feature: domain Description: WD40 Location: 32 17-3334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, 7WD40 (sd00039), WD40 (smart00320)

Seq: DMHZ01000408.1 TPA_asm: Gammaproteobacteria bacterium isolate UBA10656 contig_443, whole genome shotgun sequence (5771 bp)
Overview 1 RT 1: 1522-5771 bp Neighborhood of RT #1 [1522, 5770] minC prfB RVT_N RVT-GII GIIM Feature: gene Location: 1522-2328 bp Feature: domain Description: minC Location: 1630-2326 bp Feature: domain Description: minC Location: 163 0-23 26 bp Feature: gene Location: 2878-3876 bp Feature: domain Description: prfB Location: 2884-3850 bp Feature: domain Description: prfB Location: 2884-3 850 bp Feature: gene Location: 4469-5770 bp Feature: domain Description: RVT_N Location: 4517-4763 bp Feature: domain Description: RVT_N Location: 4517-4763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4805-5465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4805-5465 bp Feature: domain Description: GIIM Note: maturase Location: 5537-5771 bp Feature: domain Description: GIIM Note: maturase Location: 553 7-5771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT minC (TIGR01222), prfB (TIGR00020), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)