myRT

myRT report for GCA_003452245.1_ASM345224v1

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Seq: DMIV01000302.1 TPA_asm: Clostridium sp. isolate UBA8090 contig_3650, whole genome shotgun sequence (2868 bp)
Overview 1 RT 1: 1-1811 bp Neighborhood of RT #1 [1, 2149] RVT-GII SatP SatP Methyltransf_25 Feature: gene Location: 1-481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 93-370 bp Feature: gene Location: 664-1170 bp Feature: domain Description: SatP Location: 679-742 bp Feature: domain Description: SatP Location: 679-742 bp Feature: domain Description: SatP Location: 778-1147 bp Feature: domain Description: SatP Location: 778-1 1 47 bp Feature: gene Location: 1406-2149 bp Feature: domain Description: Methyltransf_25 Location: 1526-1811 bp Feature: domain Description: Methyltransf_25 Location: 1 526-1 81 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SatP (COG1584), Methyltransf_25 (pfam13649)

Seq: DMIV01000167.1 TPA_asm: Clostridium sp. isolate UBA8090 contig_2608, whole genome shotgun sequence (8482 bp)
Overview 1 RT 1: 6252-7953 bp Neighborhood of RT #1 [6252, 8307] Acyl_transf_3 Acyl_transf_3 RVT-UNC Feature: gene Location: 6252-6941 bp Ori: HAK42451.1 Feature: domain Description: Acyl_transf_3 Location: 6282-6870 bp Feature: domain Description: Acyl_transf_3 Location: 62 82 -6870 bp Feature: gene Location: 6839-7258 bp Ori: HAK42452.1 Feature: domain Description: Acyl_transf_3 Location: 6857-7253 bp Feature: domain Description: Acyl_transf_3 Location: 6857-72 53 bp Feature: gene Location: 7605-8307 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 7860-7953 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 7860-7953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acyl_transf_3 (pfam01757), RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: DMIV01000166.1 TPA_asm: Clostridium sp. isolate UBA8090 contig_2604, whole genome shotgun sequence (26253 bp)
Overview 1 RT 1: 4961-11808 bp Neighborhood of RT #1 [4961, 11885] RVT-Retrons SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 CpsB Feature: gene Location: 4961-5570 bp Feature: gene Location: 5570-7190 bp Feature: gene Location: 7187-8667 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7823-8246 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7823 -8246 bp Feature: gene Location: 9309-10865 bp Ori: HAK42436.1 Feature: domain Description: SR_TndX_transposase Location: 9333-9762 bp Feature: domain Description: SR_TndX_transposase Location: 93 3 3 -9762 bp Feature: domain Description: Recombinase Location: 9885-10227 bp Feature: domain Description: Recombinase Location: 9885-10227 bp Feature: domain Description: Zn_ribbon_recom Location: 10269-10431 bp Feature: domain Description: Zn_ribbon_recom Location: 10269-1043 1 bp Feature: domain Description: DUF4368 Location: 10731-10857 bp Feature: domain Description: DUF43 68 Location: 1073 1-10857 bp Feature: gene Location: 11085-11885 bp Ori: HAK42437.1 Feature: domain Description: CpsB Location: 11088-11808 bp Feature: domain Description: CpsB Location: 11088-11808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), CpsB (COG0836)