myRT

myRT report for GCA_003452395.1_ASM345239v1

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Seq: DMOI01000044.1 TPA_asm: Clostridiales bacterium isolate UBA12072 contig_4250, whole genome shotgun sequence (47911 bp)
Overview 1 RT 1: 260-5339 bp Neighborhood of RT #1 [260, 5359] PulG RVT-DGRs MutS_I Avd_like PGRP LysM M14_Endopeptidase_I Feature: gene Location: 260-1570 bp Ori: HAN10075.1 Feature: domain Description: PulG Location: 266-437 bp Feature: domain Description: PulG Location: 266-437 bp Feature: gene Location: 1458-2678 bp Ori: HAN10076.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1659-2337 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 659-2337 bp Feature: gene Location: 2970-3650 bp Ori: HAN10077.1 Feature: domain Description: MutS_I Location: 3000-3288 bp Feature: domain Description: MutS_I Location: 3000-3288 bp Feature: domain Description: Avd_like Location: 3366-3615 bp Feature: domain Description: Avd_like Location: 3366-361 5 bp Feature: gene Location: 4088-5359 bp Ori: HAN10078.1 Feature: domain Description: PGRP Location: 4106-4310 bp Feature: domain Description: PGRP Location: 41 06-431 0 bp Feature: domain Description: LysM Location: 4310-4439 bp Feature: domain Description: LysM Location: 431 0-4439 bp Feature: domain Description: M14_Endopeptidase_I Location: 4613-5339 bp Feature: domain Description: M1 4_Endopeptidase_I Location: 461 3-5339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PulG (pfam11773), RVT-DGRs, MutS_I (pfam01624), Avd_like (cd16376), PGRP (smart00701), LysM (smart00257), M14_Endopeptidase_I (cd06229)

Seq: DMOI01000035.1 TPA_asm: Clostridiales bacterium isolate UBA12072 contig_114, whole genome shotgun sequence (23995 bp)
Overview 1 RT 1: 3523-8441 bp Neighborhood of RT #1 [3523, 8441] HEPN_Toprim_N RVT-GII GIIM Feature: gene Location: 3523-4074 bp Feature: gene Location: 4142-5386 bp Ori: HAN09692.1 Feature: domain Description: HEPN_Toprim_N Location: 4145-4772 bp Feature: domain Description: HEPN_Toprim_N Location: 4145-4772 bp Feature: gene Location: 5527-6810 bp Ori: HAN09693.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5776-6460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5776-6460 bp Feature: domain Description: GIIM Note: maturase Location: 6538-6730 bp Feature: domain Description: GIIM Note: maturase Location: 6538-6730 bp Feature: gene Location: 7804-8067 bp Feature: gene Location: 8064-8441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_Toprim_N (pfam18871), RVT-GII, GIIM (pfam08388)

Seq: DMOI01000021.1 TPA_asm: Clostridiales bacterium isolate UBA12072 contig_3738, whole genome shotgun sequence (40538 bp)
Overview 1 RT 1: 402-4985 bp Neighborhood of RT #1 [402, 5020] RVT-UG2 SF2-N PA2301 Feature: gene Location: 402-1733 bp Ori: HAN09481.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 582-1407 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 582-1407 bp Feature: gene Location: 2675-4447 bp Ori: HAN09482.1 Feature: domain Description: SF2-N Location: 2774-3125 bp Feature: domain Description: SF2-N Location: 2774-3 125 bp Feature: gene Location: 4466-5020 bp Ori: HAN09483.1 Feature: domain Description: PA2301 Location: 4583-4985 bp Feature: domain Description: PA23 01 Location: 4583 -4985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, SF2-N (cd00046), PA2301 (cd04939)