myRT

myRT report for GCA_003452995.1_ASM345299v1

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Seq: DMMU01000773.1 TPA_asm: Candidatus Rokubacteria bacterium isolate UBA12499 contig_80707, whole genome shotgun sequence (3322 bp)
Overview 1 RT 1: 400-3322 bp Neighborhood of RT #1 [400, 3322] Mtu_PIN_fam RVT-GII Feature: gene Location: 400-837 bp Ori: HAM58824.1 Feature: domain Description: Mtu_PIN_fam Location: 409-826 bp Feature: domain Description: Mtu_PIN_fam Location: 409-826 bp Feature: gene Location: 1160-1549 bp Feature: gene Location: 2092-2989 bp Ori: HAM58826.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2386-2959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2386-2959 bp Feature: gene Location: 3104-3322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mtu_PIN_fam (TIGR00028), RVT-GII

Seq: DMMU01000689.1 TPA_asm: Candidatus Rokubacteria bacterium isolate UBA12499 contig_4318, whole genome shotgun sequence (9162 bp)
Overview 1 RT 1: 2230-8237 bp Neighborhood of RT #1 [2230, 8362] Zn_Tnp_IS91 DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM NMT1 ATZ_TRZ_like Feature: gene Location: 2230-3003 bp Ori: HAM58264.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2779-2959 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 779-2 959 bp Feature: gene Location: 3024-3833 bp Ori: HAM58265.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 3027-3312 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 302 7-3312 bp Feature: domain Description: Transposase_20 Location: 3609-3828 bp Feature: domain Description: Transposase_2 0 Location: 3609-382 8 bp Feature: gene Location: 4922-6211 bp Ori: HAM58266.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5207-5849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 07-5849 bp Feature: domain Description: GIIM Note: maturase Location: 5918-6140 bp Feature: domain Description: GIIM Note: maturase Location: 5918-6140 bp Feature: gene Location: 6625-7635 bp Ori: HAM58267.1 Feature: domain Description: NMT1 Location: 6748-7375 bp Feature: domain Description: NMT1 Location: 6748-7375 bp Feature: gene Location: 7640-8362 bp Ori: HAM58268.1 Feature: domain Description: ATZ_TRZ_like Location: 7655-8237 bp Feature: domain Description: ATZ_TRZ_like Location: 7655-82 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), NMT1 (pfam09084), ATZ_TRZ_like (cd01298)

Seq: DMMU01000925.1 TPA_asm: Candidatus Rokubacteria bacterium isolate UBA12499 contig_40576, whole genome shotgun sequence (7179 bp)
Overview 1 RT 1: 1704-6162 bp Neighborhood of RT #1 [1704, 6162] rph AMIN AmiC RVT-GII Feature: gene Location: 1704-2431 bp Feature: domain Description: rph Location: 1725-2043 bp Feature: domain Description: rph Location: 1725-2043 bp Feature: gene Location: 2428-3966 bp Ori: HAM59819.1 Feature: domain Description: AMIN Location: 3088-3184 bp Feature: domain Description: AMIN Location: 3 088-3 184 bp Feature: domain Description: AmiC Location: 3217-3892 bp Feature: domain Description: AmiC Location: 3 217-3 892 bp Feature: gene Location: 4056-4532 bp Ori: HAM59820.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4320-4530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 20-453 0 bp Feature: gene Location: 4797-5838 bp Feature: gene Location: 5869-6162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), AMIN (pfam11741), AmiC (COG0860), RVT-GII