myRT

myRT report for GCA_003453735.1_ASM345373v1

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Seq: DMNE01000421.1 TPA_asm: Nitrospiraceae bacterium isolate UBA9159 contig_4944, whole genome shotgun sequence (46336 bp)
Overview 1 RT 1: 29380-32254 bp Neighborhood of RT #1 [29380, 32301] HU_IHF Phage_int_SAM_4 xerC RVT-CRISPR-like2 GIIM CcmA Feature: gene Location: 29380-29667 bp Ori: HAM52736.1 Feature: domain Description: HU_IHF Location: 29401-29647 bp Feature: domain Description: HU_IHF Location: 29401 -29647 bp Feature: gene Location: 29778-30581 bp Ori: HAM52737.1 Feature: domain Description: Phage_int_SAM_4 Location: 29805-29955 bp Feature: domain Description: Phage_int_SAM_4 Location: 29805-29955 bp Feature: domain Description: xerC Location: 30105-30516 bp Feature: domain Description: xerC Location: 301 05-3051 6 bp Feature: gene Location: 30731-31219 bp Feature: RT Description: RVT-CRISPR-like2 Note: CRISPR-like2 RT Location: 30734-30968 bp Feature: RT Description: RVT-CRISPR-like2 Note: CRISPR-like2 RT Location: 30734-30968 bp Feature: domain Description: GIIM Note: maturase Location: 31073-31199 bp Feature: domain Description: GIIM Note: maturase Location: 31 073-31 1 99 bp Feature: gene Location: 31355-31561 bp Feature: gene Location: 31552-32301 bp Ori: HAM52739.1 Feature: domain Description: CcmA Location: 31567-32254 bp Feature: domain Description: CcmA Location: 31 567-32254 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: DMNE01000350.1 TPA_asm: Nitrospiraceae bacterium isolate UBA9159 contig_20012, whole genome shotgun sequence (8756 bp)
Overview 1 RT 1: 1861-8323 bp Neighborhood of RT #1 [1861, 8493] HigB antidote_HigA RVT-GII GIIM Tannase Penicil_amidase Feature: gene Location: 1861-2142 bp Ori: HAM52120.1 Feature: domain Description: HigB Location: 1867-2140 bp Feature: domain Description: HigB Location: 1867-2 140 bp Feature: gene Location: 2154-2456 bp Ori: HAM52121.1 Gene: higA Feature: domain Description: antidote_HigA Location: 2172-2397 bp Feature: domain Description: antidote_HigA Location: 2 172 -2 397 bp Feature: gene Location: 3211-4465 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433-4090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433-4090 bp Feature: domain Description: GIIM Note: maturase Location: 4171-4309 bp Feature: domain Description: GIIM Note: maturase Location: 4171-4309 bp Feature: gene Location: 5178-6656 bp Ori: HAM52122.1 Feature: domain Description: Tannase Location: 5379-6630 bp Feature: domain Description: Tannase Location: 5379-6630 bp Feature: gene Location: 7051-8493 bp Ori: HAM52123.1 Feature: domain Description: Penicil_amidase Location: 7168-8323 bp Feature: domain Description: Penicil_amidase Location: 7168-832 3 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: DMNE01000486.1 TPA_asm: Nitrospiraceae bacterium isolate UBA9159 contig_8140, whole genome shotgun sequence (7648 bp)
Overview 1 RT 1: 3069-7010 bp Neighborhood of RT #1 [3069, 7291] COG3547 RVT-GII GIIM YgiQ Feature: gene Location: 3069-3437 bp Ori: HAM53353.1 Feature: domain Description: COG3547 Location: 3093-3438 bp Feature: domain Description: COG3 547 Location: 3 093 -3 43 8 bp Feature: gene Location: 3656-3958 bp Feature: gene Location: 4194-5474 bp Ori: HAM53355.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4437-5106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443 7-5106 bp Feature: domain Description: GIIM Note: maturase Location: 5184-5373 bp Feature: domain Description: GIIM Note: maturase Location: 5184-53 73 bp Feature: gene Location: 5813-7291 bp Ori: HAM53356.1 Feature: domain Description: YgiQ Location: 5978-7010 bp Feature: domain Description: YgiQ Location: 5978-7010 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: DMNE01000410.1 TPA_asm: Nitrospiraceae bacterium isolate UBA9159 contig_66378, whole genome shotgun sequence (3578 bp)
Overview 1 RT 1: 1-3403 bp Neighborhood of RT #1 [1, 3462] RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C Feature: gene Location: 1-1044 bp Ori: HAM52616.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-664 bp Feature: domain Description: GIIM Note: maturase Location: 757-970 bp Feature: domain Description: GIIM Note: maturase Location: 757-970 bp Feature: gene Location: 1417-2601 bp Ori: HAM52617.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1453-1720 bp Feature: domain Description: Zn_Tnp_IS91 Location: 14 53-1720 bp Feature: domain Description: Y2_Tnp Location: 1846-2398 bp Feature: domain Description: Y2_Tnp Location: 184 6-2398 bp Feature: gene Location: 2620-3462 bp Ori: HAM52618.1 Feature: domain Description: Phage_int_SAM_4 Location: 2632-2872 bp Feature: domain Description: Phage_int_SAM_4 Location: 2632-2872 bp Feature: domain Description: INT_IntI_C Location: 2914-3403 bp Feature: domain Description: INT_IntI_C Location: 2914 -34 03 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: DMNE01000079.1 TPA_asm: Nitrospiraceae bacterium isolate UBA9159 contig_28484, whole genome shotgun sequence (11968 bp)
Overview 1 RT 1: 256-4360 bp Neighborhood of RT #1 [256, 4794] COG2402 RVT-UG4 IPT_CGTD Collagen Collagen Collagen Feature: gene Location: 256-657 bp Ori: HAM49817.1 Feature: domain Description: COG2402 Location: 268-640 bp Feature: domain Description: COG2402 Location: 268-640 bp Feature: gene Location: 654-875 bp Feature: gene Location: 1574-1831 bp Ori: HAM49819.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1580-1670 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 15 80-1670 bp Feature: gene Location: 2310-2820 bp Feature: gene Location: 3211-4794 bp Feature: domain Description: IPT_CGTD Location: 3367-3520 bp Feature: domain Description: IPT_CGTD Location: 3367-35 20 bp Feature: domain Description: Collagen Location: 3562-3727 bp Feature: domain Description: Collagen Location: 35 62-3727 bp Feature: domain Description: Collagen Location: 3865-4018 bp Feature: domain Description: Collagen Location: 3865 -4018 bp Feature: domain Description: Collagen Location: 4189-4360 bp Feature: domain Description: Collagen Location: 4189-4360 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: DMNE01000261.1 TPA_asm: Nitrospiraceae bacterium isolate UBA9159 contig_162559, whole genome shotgun sequence (3754 bp)
Overview 1 RT 1: 458-3391 bp Neighborhood of RT #1 [458, 3714] IS285 RVT-GII GIIM Transposase_mut Feature: gene Location: 458-1114 bp Ori: HAM51392.1 Feature: domain Description: IS285 Location: 671-1043 bp Feature: domain Description: IS285 Location: 6 71-1043 bp Feature: gene Location: 1089-2645 bp Ori: HAM51393.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662-2277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 6 2-2277 bp Feature: domain Description: GIIM Note: maturase Location: 2355-2574 bp Feature: domain Description: GIIM Note: maturase Location: 2355-2574 bp Feature: gene Location: 2605-3714 bp Ori: HAM51394.1 Feature: domain Description: Transposase_mut Location: 2647-3391 bp Feature: domain Description: Transposase_mut Location: 26 47-3391 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: DMNE01000497.1 TPA_asm: Nitrospiraceae bacterium isolate UBA9159 contig_43397, whole genome shotgun sequence (18082 bp)
Overview 1 RT 1: 98-5443 bp Neighborhood of RT #1 [98, 5448] RVT-GII GAF GAF PRK11360 Feature: gene Location: 98-1870 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 797-1487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 97 -1487 bp Feature: gene Location: 2868-3062 bp Feature: gene Location: 3298-5448 bp Ori: HAM53432.1 Feature: domain Description: GAF Location: 3391-3790 bp Feature: domain Description: GAF Location: 3391-37 90 bp Feature: domain Description: GAF Location: 4036-4303 bp Feature: domain Description: GAF Location: 4036-4303 bp Feature: domain Description: PRK11360 Location: 4339-5443 bp Feature: domain Description: PRK11360 Location: 4339-5443 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: DMNE01000402.1 TPA_asm: Nitrospiraceae bacterium isolate UBA9159 contig_125729, whole genome shotgun sequence (2836 bp)
Overview 1 RT 1: 1-2629 bp Neighborhood of RT #1 [1, 2629] RVT-GII Feature: gene Location: 1-292 bp Feature: gene Location: 688-2184 bp Ori: HAM52564.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099-1792 bp Feature: gene Location: 2404-2629 bp Sorry, your browser does not support inline SVG.
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