myRT

myRT report for GCA_003454155.1_ASM345415v1

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Seq: DMKV01000459.1 TPA_asm: Mucilaginibacter sp. isolate UBA10880 contig_567, whole genome shotgun sequence (5602 bp)
Overview 1 RT 1: 54-2990 bp Neighborhood of RT #1 [54, 2990] RVT-GII GIIM Feature: gene Location: 54-1259 bp Ori: HAL83455.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-882 bp Feature: domain Description: GIIM Note: maturase Location: 984-1161 bp Feature: domain Description: GIIM Note: maturase Location: 984-1 1 61 bp Feature: gene Location: 1858-2196 bp Feature: gene Location: 2406-2990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DMKV01000537.1 TPA_asm: Mucilaginibacter sp. isolate UBA10880 contig_568, whole genome shotgun sequence (11115 bp)
Overview 1 RT 1: 5477-11113 bp Neighborhood of RT #1 [5477, 11113] TPR SLR SLR COG1373 HTH_MARR RVT_N RVT-GII GIIM McrA Feature: gene Location: 5477-7129 bp Ori: HAL83839.1 Feature: domain Description: TPR Location: 5750-5822 bp Feature: domain Description: TPR Location: 5750-582 2 bp Feature: domain Description: SLR Location: 5882-6251 bp Feature: domain Description: SLR Location: 5882 -62 51 bp Feature: domain Description: SLR Location: 6284-6632 bp Feature: domain Description: SLR Location: 62 84-6632 bp Feature: gene Location: 7152-8234 bp Ori: HAL83840.1 Feature: domain Description: COG1373 Location: 7278-7461 bp Feature: domain Description: COG1373 Location: 72 78-7461 bp Feature: domain Description: HTH_MARR Location: 8043-8193 bp Feature: domain Description: HTH_MARR Location: 8043-8193 bp Feature: gene Location: 8626-10302 bp Ori: HAL83841.1 Gene: ltrA Feature: domain Description: RVT_N Location: 8659-8899 bp Feature: domain Description: RVT_N Location: 8659-8899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8947-9592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8947-9592 bp Feature: domain Description: GIIM Note: maturase Location: 9709-9928 bp Feature: domain Description: GIIM Note: maturase Location: 9709-992 8 bp Feature: domain Description: McrA Location: 9976-10279 bp Feature: domain Description: McrA Location: 9976-102 79 bp Feature: gene Location: 10883-11113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), SLR (sd00010), COG1373 (Predicted ATPase, AAA+ superfamily ), HTH_MARR (smart00347), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DMKV01000539.1 TPA_asm: Mucilaginibacter sp. isolate UBA10880 contig_3484, whole genome shotgun sequence (6529 bp)
Overview 1 RT 1: 1-5308 bp Neighborhood of RT #1 [1, 6129] RVT-GII GIIM DUF262 DUF1524 SMC_N Feature: gene Location: 1-170 bp Feature: gene Location: 462-698 bp Feature: gene Location: 879-2147 bp Ori: HAL83851.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1077-1695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1077-1695 bp Feature: domain Description: GIIM Note: maturase Location: 1749-1977 bp Feature: domain Description: GIIM Note: maturase Location: 1749-1977 bp Feature: gene Location: 2357-4210 bp Ori: HAL83852.1 Feature: domain Description: DUF262 Location: 2408-3059 bp Feature: domain Description: DUF262 Location: 2408-3 059 bp Feature: domain Description: DUF1524 Location: 3803-4034 bp Feature: domain Description: DUF1524 Location: 3 803 -403 4 bp Feature: gene Location: 4282-6129 bp Ori: HAL83853.1 Feature: domain Description: SMC_N Location: 4294-5308 bp Feature: domain Description: SMC_N Location: 4294-53 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF262 (pfam03235), DUF1524 (pfam07510), SMC_N (pfam02463)

Seq: DMKV01000541.1 TPA_asm: Mucilaginibacter sp. isolate UBA10880 contig_19280, whole genome shotgun sequence (2511 bp)
Overview 1 RT 1: 268-2511 bp Neighborhood of RT #1 [268, 2511] RVT-GII Fib_succ_major Feature: gene Location: 268-534 bp Feature: gene Location: 1003-1293 bp Ori: HAL83862.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213-1273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213-1273 bp Feature: gene Location: 1498-2133 bp Ori: HAL83863.1 Feature: domain Description: Fib_succ_major Location: 1603-2128 bp Feature: domain Description: Fib_succ_major Location: 1603-2128 bp Feature: gene Location: 2142-2511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Fib_succ_major (TIGR02145)

Seq: DMKV01000090.1 TPA_asm: Mucilaginibacter sp. isolate UBA10880 contig_1434, whole genome shotgun sequence (6372 bp)
Overview 1 RT 1: 1884-5773 bp Neighborhood of RT #1 [1884, 5850] M1_APN_like RVT-GII GIIM Feature: gene Location: 1884-2195 bp Feature: gene Location: 2354-4282 bp Ori: HAL81239.1 Feature: domain Description: M1_APN_like Location: 2522-3983 bp Feature: domain Description: M1_APN_like Location: 25 22-3983 bp Feature: gene Location: 4558-5850 bp Ori: HAL81240.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4843-5479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4843-5 479 bp Feature: domain Description: GIIM Note: maturase Location: 5554-5773 bp Feature: domain Description: GIIM Note: maturase Location: 5 5 5 4-5 773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M1_APN_like (cd09604), RVT-GII, GIIM (pfam08388)