myRT

myRT report for GCA_003454535.1_ASM345453v1

Download annotations/find similar RTs

Seq: DMJW01000449.1 TPA_asm: Cyanobacteria bacterium UBA8543 contig_25636, whole genome shotgun sequence (6230 bp)
Overview 1 RT 1: 64-4963 bp Neighborhood of RT #1 [64, 4989] RVT-GII COG5659 Crp Feature: gene Location: 64-270 bp Feature: gene Location: 519-2458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780-1491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780-1 491 bp Feature: gene Location: 2730-4064 bp Ori: HAJ62677.1 Feature: domain Description: COG5659 Location: 2769-3759 bp Feature: domain Description: COG5659 Location: 2769-3759 bp Feature: gene Location: 4216-4989 bp Feature: domain Description: Crp Location: 4672-4963 bp Feature: domain Description: Crp Location: 4672-4963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG5659 (SRSO17 transposase ), Crp (pfam00325)

Seq: DMJW01000184.1 TPA_asm: Cyanobacteria bacterium UBA8543 contig_17010, whole genome shotgun sequence (4399 bp)
Overview 1 RT 1: 162-4153 bp Neighborhood of RT #1 [162, 4154] HNHc RVT-GII RVT-GII COG5421 Feature: gene Location: 162-641 bp Ori: HAJ59818.1 Feature: domain Description: HNHc Note: nucleases Location: 450-615 bp Feature: domain Description: HNHc Note: nucleases Location: 450-615 bp Feature: gene Location: 804-1130 bp Ori: HAJ59819.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885-1116 bp Feature: gene Location: 1623-3400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884-2319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884-2 319 bp Feature: gene Location: 3448-4154 bp Feature: domain Description: COG5421 Location: 3898-4153 bp Feature: domain Description: COG542 1 Location: 3898-4153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII, COG5421 (Transposase )

Seq: DMJW01000357.1 TPA_asm: Cyanobacteria bacterium UBA8543 contig_10237, whole genome shotgun sequence (6517 bp)
Overview 1 RT 1: 1-6517 bp Neighborhood of RT #1 [1, 6517] RVT_N RVT-GII GIIM McrA TPR TPR TPR DUF563 Feature: gene Location: 1-491 bp Feature: gene Location: 506-2287 bp Gene: ltrA Feature: domain Description: RVT_N Location: 542-788 bp Feature: domain Description: RVT_N Location: 542-788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-1499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 0-1499 bp Feature: domain Description: GIIM Note: maturase Location: 1607-1841 bp Feature: domain Description: GIIM Note: maturase Location: 1607-1841 bp Feature: domain Description: McrA Location: 1919-2189 bp Feature: domain Description: McrA Location: 1919-2189 bp Feature: gene Location: 2987-5080 bp Ori: HAJ61641.1 Feature: domain Description: TPR Location: 2993-3209 bp Feature: domain Description: TPR Location: 2993 -3 209 bp Feature: domain Description: TPR Location: 3218-3500 bp Feature: domain Description: TPR Location: 3 218-3 500 bp Feature: domain Description: TPR Location: 3521-3803 bp Feature: domain Description: TPR Location: 3 521-3 803 bp Feature: domain Description: DUF563 Location: 4352-4964 bp Feature: domain Description: DUF563 Location: 43 52-4964 bp Feature: gene Location: 5286-6517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), TPR (smart00028), DUF563 (pfam04577)

Seq: DMJW01000598.1 TPA_asm: Cyanobacteria bacterium UBA8543 contig_60, whole genome shotgun sequence (24267 bp)
Overview 1 RT 1: 17231-22150 bp Neighborhood of RT #1 [17231, 22150] COG2018 RVT_N RVT-GII GIIM McrA Carot_N Feature: gene Location: 17231-17857 bp Feature: gene Location: 18021-18398 bp Ori: HAJ64198.1 Feature: domain Description: COG2018 Location: 18048-18390 bp Feature: domain Description: COG2018 Location: 1804 8-18390 bp Feature: gene Location: 18493-20187 bp Ori: HAJ64199.1 Gene: ltrA Feature: domain Description: RVT_N Location: 18535-18781 bp Feature: domain Description: RVT_N Location: 18535-18781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18823-19459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18823-194 59 bp Feature: domain Description: GIIM Note: maturase Location: 19558-19792 bp Feature: domain Description: GIIM Note: maturase Location: 19558-19792 bp Feature: domain Description: McrA Location: 19870-20179 bp Feature: domain Description: McrA Location: 19870-20179 bp Feature: gene Location: 21088-21618 bp Ori: HAJ64200.1 Feature: domain Description: Carot_N Location: 21124-21562 bp Feature: domain Description: Carot_N Location: 21124 -21562 bp Feature: gene Location: 21839-22150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2018 (Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Carot_N (pfam09150)

Seq: DMJW01000109.1 TPA_asm: Cyanobacteria bacterium UBA8543 contig_6194, whole genome shotgun sequence (7643 bp)
Overview 1 RT 1: 2760-6982 bp Neighborhood of RT #1 [2760, 7023] PRK05764 InsQ RVT_N RVT-GII GIIM McrA Feature: gene Location: 2760-3932 bp Ori: HAJ58990.1 Feature: domain Description: PRK05764 Location: 2763-3918 bp Feature: domain Description: PRK05 764 Location: 2763-3918 bp Feature: gene Location: 4100-4996 bp Ori: HAJ58991.1 Feature: domain Description: InsQ Location: 4109-4919 bp Feature: domain Description: InsQ Location: 4109-4919 bp Feature: gene Location: 5335-7023 bp Ori: HAJ58992.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5347-5593 bp Feature: domain Description: RVT_N Location: 5 347-5 5 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5635-6295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 635 -6295 bp Feature: domain Description: GIIM Note: maturase Location: 6373-6607 bp Feature: domain Description: GIIM Note: maturase Location: 6373-6607 bp Feature: domain Description: McrA Location: 6706-6982 bp Feature: domain Description: McrA Location: 6706-6982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05764 (aspartate aminotransferase; Provisional), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DMJW01000501.1 TPA_asm: Cyanobacteria bacterium UBA8543 contig_1146, whole genome shotgun sequence (18246 bp)
Overview 1 RT 1: 42-2629 bp Neighborhood of RT #1 [42, 2629] RVT_N RVT-GII HTH_OrfB_IS605 Feature: gene Location: 42-1738 bp Gene: ltrA Feature: domain Description: RVT_N Location: 78-324 bp Feature: domain Description: RVT_N Location: 78-324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 6 -96 9 bp Feature: gene Location: 2317-2427 bp Feature: domain Description: HTH_OrfB_IS605 Location: 2320-2422 bp Feature: domain Description: HTH_OrfB_IS6 05 Location: 2320-2422 bp Feature: gene Location: 2444-2629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, HTH_OrfB_IS605 (pfam12323)

Seq: DMJW01000197.1 TPA_asm: Cyanobacteria bacterium UBA8543 contig_1087, whole genome shotgun sequence (26170 bp)
Overview 1 RT 1: 19105-25509 bp Neighborhood of RT #1 [19105, 25595] NERD DEXQc_UvrD DEXQc_UvrD RVT-UNC COG2907 COG1233 Feature: gene Location: 19105-19312 bp Ori: HAJ59920.1 Feature: domain Description: NERD Location: 19153-19309 bp Feature: domain Description: NERD Location: 19153-19309 bp Feature: gene Location: 19407-20723 bp Feature: domain Description: DEXQc_UvrD Location: 19806-19920 bp Feature: domain Description: DEXQc_UvrD Location: 19806-19920 bp Feature: domain Description: DEXQc_UvrD Location: 20049-20175 bp Feature: domain Description: DEXQc_UvrD Location: 20049-2017 5 bp Feature: gene Location: 20981-22482 bp Ori: HAJ59921.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 21203-21863 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 21203-21863 bp Feature: gene Location: 22547-23761 bp Ori: HAJ59922.1 Feature: domain Description: COG2907 Location: 22550-23750 bp Feature: domain Description: COG2907 Location: 22550-237 50 bp Feature: gene Location: 24057-25595 bp Ori: HAJ59923.1 Feature: domain Description: COG1233 Location: 24063-25509 bp Feature: domain Description: COG1233 Location: 24063-25509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), DEXQc_UvrD (cd17932), RVT-UG19/RVT-UG9/RVT-UG7(RVT-UNC), COG2907 (Predicted NAD/FAD-binding protein ), COG1233 (Phytoene dehydrogenase-related protein )

Seq: DMJW01000339.1 TPA_asm: Cyanobacteria bacterium UBA8543 contig_3826, whole genome shotgun sequence (9260 bp)
Overview 1 RT 1: 2233-6115 bp Neighborhood of RT #1 [2233, 6273] COG2361 Y1_Tnp RVT_N RVT-GII GIIM InsQ Feature: gene Location: 2233-2370 bp Feature: domain Description: COG2361 Location: 2236-2362 bp Feature: domain Description: COG2361 Location: 2236-2362 bp Feature: gene Location: 2372-2632 bp Ori: HAJ61389.1 Gene: tnpA Feature: domain Description: Y1_Tnp Location: 2378-2618 bp Feature: domain Description: Y1_Tnp Location: 2378 -2618 bp Feature: gene Location: 3301-4581 bp Ori: HAJ61390.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3337-3583 bp Feature: domain Description: RVT_N Location: 3337-358 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3625-4318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3625-4318 bp Feature: domain Description: GIIM Note: maturase Location: 4417-4579 bp Feature: domain Description: GIIM Note: maturase Location: 4417-4579 bp Feature: gene Location: 4684-5105 bp Feature: gene Location: 5242-6273 bp Feature: domain Description: InsQ Location: 5251-6115 bp Feature: domain Description: InsQ Location: 5251-6115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2361 (Uncharacterized conserved protein, contains HEPN domain ), Y1_Tnp (pfam01797), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: DMJW01000149.1 TPA_asm: Cyanobacteria bacterium UBA8543 contig_25139, whole genome shotgun sequence (4736 bp)
Overview 1 RT 1: 1-4397 bp Neighborhood of RT #1 [1, 4410] YfmG RVT-DGRs Avd_like COG4249 YfmG Feature: gene Location: 1-205 bp Feature: gene Location: 480-701 bp Ori: HAJ59446.1 Feature: domain Description: YfmG Location: 486-588 bp Feature: domain Description: YfmG Location: 486-588 bp Feature: gene Location: 750-1808 bp Ori: HAJ59447.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 960-1602 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9 60-1602 bp Feature: gene Location: 1805-2143 bp Ori: HAJ59448.1 Gene: avd Feature: domain Description: Avd_like Location: 1823-2129 bp Feature: domain Description: Avd_like Location: 1823-2129 bp Feature: gene Location: 2273-4410 bp Ori: HAJ59449.1 Feature: domain Description: COG4249 Location: 2276-2939 bp Feature: domain Description: COG4249 Location: 2276-29 39 bp Feature: domain Description: YfmG Location: 3572-4397 bp Feature: domain Description: YfmG Location: 3572-439 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376), COG4249 (Uncharacterized protein, contains caspase domain )