myRT

myRT report for GCA_003455115.1_ASM345511v1

Download annotations/find similar RTs

Seq: DMSF01000273.1 TPA_asm: Afipia sp. isolate UBA11120 contig_430, whole genome shotgun sequence (15135 bp)
Overview 1 RT 1: 2456-12071 bp Neighborhood of RT #1 [2456, 12358] YhaN MPP_Mre11_N RVT-Retrons DEXQc_UvrD DEXQc_UvrD recB YbjD YbjD Feature: gene Location: 2456-5959 bp Feature: domain Description: YhaN Location: 2459-5924 bp Feature: domain Description: YhaN Location: 2459-5924 bp Feature: gene Location: 5963-7231 bp Feature: domain Description: MPP_Mre11_N Location: 5975-6629 bp Feature: domain Description: MPP_Mre1 1 _N Location: 5975-6629 bp Feature: gene Location: 7699-9477 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7831-8452 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7831 -8452 bp Feature: gene Location: 9579-10727 bp Feature: domain Description: DEXQc_UvrD Location: 9588-9771 bp Feature: domain Description: DEXQc_UvrD Location: 9588-9771 bp Feature: domain Description: DEXQc_UvrD Location: 9960-10161 bp Feature: domain Description: DEXQc_UvrD Location: 9960-1 01 61 bp Feature: domain Description: recB Location: 10617-10668 bp Feature: domain Description: recB Location: 1 061 7-1 0668 bp Feature: gene Location: 10724-12358 bp Feature: domain Description: YbjD Location: 10727-10868 bp Feature: domain Description: YbjD Location: 1 0727-1 0868 bp Feature: domain Description: YbjD Location: 11411-12071 bp Feature: domain Description: YbjD Location: 1 1 41 1 -1 2071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), YhaN (COG4717), MPP_Mre11_N (cd00840), RVT-Retrons, DEXQc_UvrD (cd17932), recB (TIGR00609)

Seq: DMSF01000239.1 TPA_asm: Afipia sp. isolate UBA11120 contig_854, whole genome shotgun sequence (55904 bp)
Overview 1 RT 1: 5975-10991 bp Neighborhood of RT #1 [5975, 11020] RVT-GII GIIM DDE_5 DUF2274 Feature: gene Location: 5975-6577 bp Feature: gene Location: 6922-7128 bp Feature: gene Location: 7780-9081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8065-8704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8065-8704 bp Feature: domain Description: GIIM Note: maturase Location: 8779-8998 bp Feature: domain Description: GIIM Note: maturase Location: 8779-8998 bp Feature: gene Location: 9479-10831 bp Feature: domain Description: DDE_5 Location: 9557-10349 bp Feature: domain Description: DDE_5 Location: 9557-10349 bp Feature: gene Location: 10862-11020 bp Feature: domain Description: DUF2274 Location: 10868-10991 bp Feature: domain Description: DUF2 2 74 Location: 10868-10991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2274 (pfam10038), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546)