myRT

myRT report for GCA_003455135.1_ASM345513v1

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Seq: DMSD01000356.1 TPA_asm: Afipia sp. isolate UBA11122 contig_34421, whole genome shotgun sequence (3847 bp)
Overview 1 RT 1: 131-3288 bp Neighborhood of RT #1 [131, 3371] DUF2274 DDE_5 RVT-GII GIIM Feature: gene Location: 131-289 bp Feature: domain Description: DUF2274 Location: 137-260 bp Feature: domain Description: DUF2274 Location: 1 37-260 bp Feature: gene Location: 320-1672 bp Feature: domain Description: DDE_5 Location: 398-1190 bp Feature: domain Description: DDE_5 Location: 398-1 1 90 bp Feature: gene Location: 2070-3371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2355-2994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2355-2994 bp Feature: domain Description: GIIM Note: maturase Location: 3069-3288 bp Feature: domain Description: GIIM Note: maturase Location: 3069-3288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2274 (pfam10038), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546)

Seq: DMSD01000065.1 TPA_asm: Afipia sp. isolate UBA11122 contig_1092, whole genome shotgun sequence (17017 bp)
Overview 1 RT 1: 1-9467 bp Neighborhood of RT #1 [1, 9502] DEXQc_UvrD DEXQc_UvrD recB RVT-Retrons MPP_Mre11_N YhaN Feature: gene Location: 1-1234 bp Feature: gene Location: 1231-2379 bp Feature: domain Description: DEXQc_UvrD Location: 1240-1423 bp Feature: domain Description: DEXQc_UvrD Location: 12 40-142 3 bp Feature: domain Description: DEXQc_UvrD Location: 1612-1813 bp Feature: domain Description: DEXQc_UvrD Location: 1612 -1813 bp Feature: domain Description: recB Location: 2269-2320 bp Feature: domain Description: recB Location: 2 2 69-2 32 0 bp Feature: gene Location: 2481-4259 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2613-3234 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 613-32 34 bp Feature: gene Location: 4727-5995 bp Feature: domain Description: MPP_Mre11_N Location: 4739-5393 bp Feature: domain Description: MPP_Mre11_N Location: 4739-5393 bp Feature: gene Location: 5999-9502 bp Feature: domain Description: YhaN Location: 6002-9467 bp Feature: domain Description: YhaN Location: 6002 -9467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXQc_UvrD (cd17932), recB (TIGR00609), RVT-Retrons, MPP_Mre11_N (cd00840), YhaN (COG4717)