myRT

myRT report for GCA_003455905.1_ASM345590v1

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Seq: DMPU01000444.1 TPA_asm: Chryseobacterium sp. isolate UBA8719 contig_200777, whole genome shotgun sequence (3231 bp)
Overview 1 RT 1: 1571-2860 bp Neighborhood of RT #1 [1571, 3057] HTH_XRE RVT-Retrons Feature: gene Location: 1571-1819 bp Feature: gene Location: 1884-2174 bp Ori: HAO08765.1 Feature: domain Description: HTH_XRE Location: 1896-2058 bp Feature: domain Description: HTH_XRE Location: 1 896-2058 bp Feature: gene Location: 2155-3057 bp Ori: HAO08766.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2329-2860 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2329-2860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: DMPU01000448.1 TPA_asm: Chryseobacterium sp. isolate UBA8719 contig_60694, whole genome shotgun sequence (18654 bp)
Overview 1 RT 1: 11537-17718 bp Neighborhood of RT #1 [11537, 18071] WGR_DNA_ligase RVT-Retrons Feature: gene Location: 11537-13174 bp Feature: gene Location: 13178-16510 bp Ori: HAO08804.1 Feature: domain Description: WGR_DNA_ligase Location: 13193-13412 bp Feature: domain Description: WGR_DNA_ligase Location: 13193-13412 bp Feature: gene Location: 16557-18071 bp Ori: HAO08805.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17100-17718 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17100-17718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), RVT-Retrons

Seq: DMPU01000462.1 TPA_asm: Chryseobacterium sp. isolate UBA8719 contig_76330, whole genome shotgun sequence (3908 bp)
Overview 1 RT 1: 1-3908 bp Neighborhood of RT #1 [1, 3908] KdpA Potass_KdpF RVT-UG2 Feature: gene Location: 1-242 bp Ori: HAO08916.1 Feature: domain Description: KdpA Location: 4-241 bp Feature: domain Description: KdpA Location: 4-241 bp Feature: gene Location: 379-456 bp Ori: HAO08917.1 Feature: domain Description: Potass_KdpF Location: 391-454 bp Feature: domain Description: Potass_KdpF Location: 3 91-454 bp Feature: gene Location: 851-2428 bp Ori: HAO08918.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1115-2072 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1115-2072 bp Feature: gene Location: 3071-3555 bp Feature: gene Location: 3650-3908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KdpA (pfam03814), Potass_KdpF (pfam09604), RVT-UG2

Seq: DMPU01000474.1 TPA_asm: Chryseobacterium sp. isolate UBA8719 contig_181473, whole genome shotgun sequence (3198 bp)
Overview 1 RT 1: 418-2999 bp Neighborhood of RT #1 [418, 3073] RVT-Retrons RVT-Retrons HTH_XRE Couple_hipA HipA_C Feature: gene Location: 418-630 bp Feature: gene Location: 642-971 bp Ori: HAO08983.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 786-960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 786-960 bp Feature: gene Location: 1013-1477 bp Ori: HAO08984.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1028-1313 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1028-1313 bp Feature: gene Location: 1512-1826 bp Ori: HAO08985.1 Feature: domain Description: HTH_XRE Location: 1590-1755 bp Feature: domain Description: HTH_XRE Location: 1590-1755 bp Feature: gene Location: 1823-3073 bp Ori: HAO08986.1 Feature: domain Description: Couple_hipA Location: 1886-2117 bp Feature: domain Description: Couple_hipA Location: 1886-2117 bp Feature: domain Description: HipA_C Location: 2366-2999 bp Feature: domain Description: HipA_C Location: 2366-2999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), Couple_hipA (pfam13657), HipA_C (pfam07804)

Seq: DMPU01000020.1 TPA_asm: Chryseobacterium sp. isolate UBA8719 contig_274535, whole genome shotgun sequence (4466 bp)
Overview 1 RT 1: 128-4401 bp Neighborhood of RT #1 [128, 4466] AIPR RVT-UG28b PriCT_2 Feature: gene Location: 128-1837 bp Ori: HAO05535.1 Feature: domain Description: AIPR Location: 896-1754 bp Feature: domain Description: AIPR Location: 896-175 4 bp Feature: gene Location: 2005-3780 bp Ori: HAO05536.1 Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 2488-3187 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 2488-3187 bp Feature: gene Location: 3912-4466 bp Ori: HAO05537.1 Feature: domain Description: PriCT_2 Location: 4185-4401 bp Feature: domain Description: PriCT_2 Location: 4185 -4401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIPR (pfam10592), RVT-UG28b, PriCT_2 (pfam08707)