myRT

myRT report for GCA_003456115.1_ASM345611v1

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Seq: DMPE01000129.1 TPA_asm: Planktothrix sp. UBA8407 contig_1090, whole genome shotgun sequence (7379 bp)
Overview 1 RT 1: 3664-7380 bp Neighborhood of RT #1 [3664, 7379] DUF2518 InsQ RVT-GII GIIM RVT_N Feature: gene Location: 3664-4191 bp Ori: HAO10583.1 Feature: domain Description: DUF2518 Location: 3685-4108 bp Feature: domain Description: DUF251 8 Location: 3685-41 08 bp Feature: gene Location: 4367-5584 bp Ori: HAO10584.1 Feature: domain Description: InsQ Location: 4412-5495 bp Feature: domain Description: InsQ Location: 441 2-5495 bp Feature: gene Location: 5680-7001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5686-6196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5686-61 96 bp Feature: domain Description: GIIM Note: maturase Location: 6301-6427 bp Feature: domain Description: GIIM Note: maturase Location: 6301 -6427 bp Feature: gene Location: 7200-7379 bp Feature: domain Description: RVT_N Location: 7209-7380 bp Feature: domain Description: RVT_N Location: 7209-7380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2518 (pfam10726), InsQ (COG0675), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: DMPE01000070.1 TPA_asm: Planktothrix sp. UBA8407 contig_4221, whole genome shotgun sequence (7730 bp)
Overview 1 RT 1: 3202-6861 bp Neighborhood of RT #1 [3202, 6860] Uma2 YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 3202-3804 bp Ori: HAO10123.1 Feature: domain Description: Uma2 Location: 3235-3787 bp Feature: domain Description: Uma2 Location: 32 35-3787 bp Feature: gene Location: 4041-4190 bp Ori: HAO10124.1 Feature: domain Description: YfmG Location: 4044-4155 bp Feature: domain Description: YfmG Location: 4044-4155 bp Feature: gene Location: 4212-5270 bp Ori: HAO10125.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4416-5064 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4416-5064 bp Feature: gene Location: 5267-5617 bp Ori: HAO10126.1 Gene: avd Feature: domain Description: Avd_like Location: 5285-5591 bp Feature: domain Description: Avd_like Location: 52 85-5591 bp Feature: gene Location: 5883-6860 bp Ori: HAO10127.1 Feature: domain Description: YfmG Location: 6003-6861 bp Feature: domain Description: YfmG Location: 6003-6861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: DMPE01000498.1 TPA_asm: Planktothrix sp. UBA8407 contig_6477, whole genome shotgun sequence (2910 bp)
Overview 1 RT 1: 61-2890 bp Neighborhood of RT #1 [61, 2910] COG4634 COG2442 RVT-UG12 BaeS Feature: gene Location: 61-335 bp Feature: domain Description: COG4634 Location: 64-202 bp Feature: domain Description: COG463 4 Location: 64-202 bp Feature: gene Location: 332-556 bp Feature: domain Description: COG2442 Location: 341-548 bp Feature: domain Description: COG2442 Location: 3 41-548 bp Feature: gene Location: 840-2423 bp Ori: HAO13770.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1209-1650 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1209-1650 bp Feature: gene Location: 2551-2910 bp Ori: HAO13771.1 Feature: domain Description: BaeS Location: 2581-2890 bp Feature: domain Description: BaeS Location: 2581-2890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4634 (Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component ), COG2442 (Uncharacterized conserved protein, DUF433 family ), RVT-UG12, BaeS (COG0642)

Seq: DMPE01000239.1 TPA_asm: Planktothrix sp. UBA8407 contig_2689, whole genome shotgun sequence (10253 bp)
Overview 1 RT 1: 476-4141 bp Neighborhood of RT #1 [476, 4563] TPR_2 TPR_2 RVT-Retrons VOC_like PinE Zn_ribbon_recom Feature: gene Location: 476-2410 bp Ori: HAO11521.1 Feature: domain Description: TPR_2 Location: 509-587 bp Feature: domain Description: TPR_2 Location: 509-587 bp Feature: domain Description: TPR_2 Location: 596-689 bp Feature: domain Description: TPR_2 Location: 596-689 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1139-1763 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1139-1763 bp Feature: gene Location: 2909-3271 bp Ori: HAO11522.1 Feature: domain Description: VOC_like Location: 2933-3260 bp Feature: domain Description: VOC_like Location: 2933-3260 bp Feature: gene Location: 3268-4563 bp Ori: HAO11523.1 Feature: domain Description: PinE Location: 3337-3919 bp Feature: domain Description: PinE Location: 3337-3919 bp Feature: domain Description: Zn_ribbon_recom Location: 4012-4141 bp Feature: domain Description: Zn_ribbon_recom Location: 4 012-4 14 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_2 (pfam07719), RVT-Retrons, VOC_like (cd16355), PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: DMPE01000111.1 TPA_asm: Planktothrix sp. UBA8407 contig_3996, whole genome shotgun sequence (9573 bp)
Overview 1 RT 1: 1-4580 bp Neighborhood of RT #1 [1, 4582] YgbK RVT-GII GIIM HNH PRK14299 PRK13410 Feature: gene Location: 1-357 bp Feature: gene Location: 425-1747 bp Ori: HAO10453.1 Feature: domain Description: YgbK Location: 437-1730 bp Feature: domain Description: YgbK Location: 437-1730 bp Feature: gene Location: 1897-2835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1900-2266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1900-2266 bp Feature: domain Description: GIIM Note: maturase Location: 2380-2611 bp Feature: domain Description: GIIM Note: maturase Location: 2380-2611 bp Feature: domain Description: HNH Note: nucleases Location: 2671-2773 bp Feature: domain Description: HNH Note: nucleases Location: 2671-2773 bp Feature: gene Location: 3009-3998 bp Ori: HAO10454.1 Feature: domain Description: PRK14299 Location: 3021-3963 bp Feature: domain Description: PRK14299 Location: 3021-3963 bp Feature: gene Location: 4064-4582 bp Ori: HAO10455.1 Feature: domain Description: PRK13410 Location: 4067-4580 bp Feature: domain Description: PRK13410 Location: 4067-45 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgbK (COG3395), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK14299 (chaperone protein DnaJ; Provisional), PRK13410 (molecular chaperone DnaK; Provisional)

Seq: DMPE01000422.1 TPA_asm: Planktothrix sp. UBA8407 contig_1504, whole genome shotgun sequence (24283 bp)
Overview 1 RT 1: 8089-14140 bp Neighborhood of RT #1 [8089, 14163] SH3_3 SH3_3 pheS RVT_N RVT-GII RVT-GII GIIM HNH tspaseT_teng_C surE Feature: gene Location: 8089-8736 bp Ori: HAO13111.1 Feature: domain Description: SH3_3 Location: 8272-8437 bp Feature: domain Description: SH3_3 Location: 8272-8437 bp Feature: domain Description: SH3_3 Location: 8548-8722 bp Feature: domain Description: SH3_3 Location: 8548-8722 bp Feature: gene Location: 8775-9710 bp Ori: HAO13112.1 Feature: domain Description: pheS Location: 8781-9708 bp Feature: domain Description: pheS Location: 8781-9708 bp Feature: gene Location: 9862-11688 bp Gene: ltrA Feature: domain Description: RVT_N Location: 9901-10147 bp Feature: domain Description: RVT_N Location: 9901-10147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10189-10300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10189-10300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10342-10906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10342-10906 bp Feature: domain Description: GIIM Note: maturase Location: 11005-11206 bp Feature: domain Description: GIIM Note: maturase Location: 11005-11206 bp Feature: domain Description: HNH Note: nucleases Location: 11443-11578 bp Feature: domain Description: HNH Note: nucleases Location: 11443-11578 bp Feature: gene Location: 12820-13077 bp Feature: domain Description: tspaseT_teng_C Location: 12823-13048 bp Feature: domain Description: tspaseT_teng_C Location: 12823-13048 bp Feature: gene Location: 13357-14163 bp Ori: HAO13113.1 Feature: domain Description: surE Location: 13360-14140 bp Feature: domain Description: surE Location: 1336 0-14140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SH3_3 (pfam08239), pheS (TIGR00468), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), tspaseT_teng_C (TIGR01766), surE (TIGR00087)