myRT

myRT report for GCA_003456375.1_ASM345637v1

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Seq: DMSJ01000037.1 TPA_asm: Afipia sp. isolate UBA11124 contig_8332, whole genome shotgun sequence (18294 bp)
Overview 1 RT 1: 1390-6406 bp Neighborhood of RT #1 [1390, 6435] RVT-GII GIIM DDE_5 DUF2274 Feature: gene Location: 1390-1992 bp Feature: gene Location: 2337-2543 bp Feature: gene Location: 3195-4496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3480-4119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3480-41 1 9 bp Feature: domain Description: GIIM Note: maturase Location: 4194-4413 bp Feature: domain Description: GIIM Note: maturase Location: 41 94-441 3 bp Feature: gene Location: 4894-6246 bp Feature: domain Description: DDE_5 Location: 4972-5764 bp Feature: domain Description: DDE_5 Location: 4972-5764 bp Feature: gene Location: 6277-6435 bp Feature: domain Description: DUF2274 Location: 6283-6406 bp Feature: domain Description: DUF2274 Location: 6283-6406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546), DUF2274 (pfam10038)

Seq: DMSJ01000273.1 TPA_asm: Afipia sp. isolate UBA11124 contig_1303, whole genome shotgun sequence (37000 bp)
Overview 1 RT 1: 21309-30924 bp Neighborhood of RT #1 [21309, 31211] YhaN MPP_Mre11_N RVT-Retrons DEXQc_UvrD DEXQc_UvrD recB YbjD YbjD Feature: gene Location: 21309-24812 bp Feature: domain Description: YhaN Location: 21312-24777 bp Feature: domain Description: YhaN Location: 2 1312 -2 4777 bp Feature: gene Location: 24816-26084 bp Feature: domain Description: MPP_Mre11_N Location: 24828-25482 bp Feature: domain Description: MPP_Mre11_N Location: 2 482 8-2 5482 bp Feature: gene Location: 26552-28330 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26684-27305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 6684-2 7305 bp Feature: gene Location: 28432-29580 bp Feature: domain Description: DEXQc_UvrD Location: 28441-28624 bp Feature: domain Description: DEXQc_UvrD Location: 2 8441-2 862 4 bp Feature: domain Description: DEXQc_UvrD Location: 28813-29014 bp Feature: domain Description: DEXQc_UvrD Location: 2 8813-2 9014 bp Feature: domain Description: recB Location: 29470-29521 bp Feature: domain Description: recB Location: 2 9470-2 952 1 bp Feature: gene Location: 29577-31211 bp Feature: domain Description: YbjD Location: 29580-29721 bp Feature: domain Description: YbjD Location: 2 9580-2 972 1 bp Feature: domain Description: YbjD Location: 30264-30924 bp Feature: domain Description: YbjD Location: 302 64-3092 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhaN (COG4717), MPP_Mre11_N (cd00840), RVT-Retrons, DEXQc_UvrD (cd17932), recB (TIGR00609), YbjD (COG3593)