myRT

myRT report for GCA_003457665.1_ASM345766v1

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Seq: QRSV01000009.1 Bacteroides cellulosilyticus strain AF29-17 AF29-17.Scaf9, whole genome shotgun sequence (397393 bp)
Overview 1 RT 1: 180689-185376 bp 2 RT 2: 225178-235405 bp Neighborhood of RT #1 [180689, 185376] RVT-UG27 HTH_Hin_like Neighborhood of RT #2 [225178, 235405] DUF1566 Avd_like DUF1566 RVT-DGRs Feature: gene Location: 180689-181678 bp Feature: gene Location: 181713-182171 bp Feature: gene Location: 183196-184464 bp Ori: RGQ10988.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 183385-184021 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 83385-1 84021 bp Feature: gene Location: 184461-184784 bp Ori: RGQ10989.1 Feature: domain Description: HTH_Hin_like Location: 184512-184614 bp Feature: domain Description: HTH_Hin_like Location: 1 8451 2-1 8461 4 bp Feature: gene Location: 184774-185376 bp Feature: gene Location: 225178-231204 bp Ori: RGQ11038.1 Feature: domain Description: DUF1566 Location: 230893-231193 bp Feature: domain Description: DUF1 566 Location: 230893-231 1 93 bp Feature: gene Location: 231334-231735 bp Ori: RGQ11039.1 Feature: domain Description: Avd_like Location: 231373-231712 bp Feature: domain Description: Avd_like Location: 231 373-231 71 2 bp Feature: gene Location: 231748-233169 bp Ori: RGQ11040.1 Feature: domain Description: DUF1566 Location: 231820-231964 bp Feature: domain Description: DUF1 566 Location: 231 820-231 964 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 232153-232894 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2321 53-232894 bp Feature: gene Location: 233160-233513 bp Feature: gene Location: 233576-235405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, HTH_Hin_like (cd00569), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: QRSV01000007.1 Bacteroides cellulosilyticus strain AF29-17 AF29-17.Scaf7, whole genome shotgun sequence (470302 bp)
Overview 1 RT 1: 41046-46222 bp Neighborhood of RT #1 [41046, 46230] COG1237 secD RVT-Retrons MFS_DtpA_like HptA Feature: gene Location: 41046-41852 bp Ori: RGQ11985.1 Feature: domain Description: COG1237 Location: 41049-41847 bp Feature: domain Description: COG12 37 Location: 41049-41847 bp Feature: gene Location: 41872-42726 bp Ori: RGQ11986.1 Feature: domain Description: secD Location: 42067-42343 bp Feature: domain Description: secD Location: 42 067-42 343 bp Feature: gene Location: 42723-43844 bp Ori: RGQ11987.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43035-43587 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43035-43587 bp Feature: gene Location: 44116-45654 bp Ori: RGQ11988.1 Feature: domain Description: MFS_DtpA_like Location: 44137-45625 bp Feature: domain Description: MFS_DtpA_like Location: 44137-4562 5 bp Feature: gene Location: 45694-46230 bp Ori: RGQ11989.1 Gene: hpt Feature: domain Description: HptA Location: 45712-46222 bp Feature: domain Description: HptA Location: 45712 -462 2 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1237 (Metal-dependent hydrolase, beta-lactamase superfamily II ), secD (TIGR01129), RVT-Retrons, MFS_DtpA_like (cd17346), HptA (COG0634)

Seq: QRSV01000008.1 Bacteroides cellulosilyticus strain AF29-17 AF29-17.Scaf8, whole genome shotgun sequence (463821 bp)
Overview 1 RT 1: 305599-314239 bp Neighborhood of RT #1 [305599, 314239] Alginate_lyase Hepar_II_III LacZ RVT-GII GIIM DUF4890 Feature: gene Location: 305599-307509 bp Ori: RGQ11556.1 Feature: domain Description: Alginate_lyase Location: 305992-306511 bp Feature: domain Description: Alginate_lyase Location: 3 05992-3 06511 bp Feature: domain Description: Hepar_II_III Location: 306763-307144 bp Feature: domain Description: Hepar_II_III Location: 3 06763 -3 07144 bp Feature: gene Location: 307519-310305 bp Ori: RGQ11557.1 Feature: domain Description: LacZ Location: 307600-308863 bp Feature: domain Description: LacZ Location: 3 07600-3 08863 bp Feature: gene Location: 310412-311653 bp Ori: RGQ11664.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 310577-311192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 10577-3 11192 bp Feature: domain Description: GIIM Note: maturase Location: 311246-311477 bp Feature: domain Description: GIIM Note: maturase Location: 3 11246-3 11477 bp Feature: gene Location: 312318-312854 bp Ori: RGQ11558.1 Feature: domain Description: DUF4890 Location: 312420-312786 bp Feature: domain Description: DUF4890 Location: 3 12420-3 12786 bp Feature: gene Location: 313337-314239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alginate_lyase (pfam05426), Hepar_II_III (pfam07940), LacZ (COG3250), RVT-GII, GIIM (pfam08388), DUF4890 (pfam16231)