myRT

myRT report for GCA_003457725.1_ASM345772v1

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Seq: QRSY01000027.1 Bacteroides ovatus strain AF29-12 AF29-12.Scaf27, whole genome shotgun sequence (77462 bp)
Overview 1 RT 1: 169-12445 bp Neighborhood of RT #1 [169, 12561] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 169-993 bp Feature: domain Description: PDDEXK_2 Location: 190-868 bp Feature: domain Description: PDDEXK_2 Location: 1 90-868 bp Feature: gene Location: 1205-3367 bp Feature: gene Location: 3573-4703 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3894-4437 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3894-4437 bp Feature: gene Location: 4705-10662 bp Feature: domain Description: DUF4011 Location: 5935-6448 bp Feature: domain Description: DUF401 1 Location: 5935-6448 bp Feature: domain Description: DEXXQc_SF1 Location: 6787-7753 bp Feature: domain Description: DEXXQc_SF1 Location: 6787-7753 bp Feature: domain Description: DEXXQc_SF1 Location: 8215-8974 bp Feature: domain Description: DEXXQc_SF1 Location: 821 5-8974 bp Feature: domain Description: TIGR00376 Location: 9106-9493 bp Feature: domain Description: TIGR00376 Location: 91 06-9493 bp Feature: domain Description: MTES_1575 Location: 9646-9931 bp Feature: domain Description: MTES_1 575 Location: 9646-9931 bp Feature: domain Description: DUF3320 Location: 10171-10312 bp Feature: domain Description: DUF3320 Location: 1 01 71 -1 031 2 bp Feature: gene Location: 10759-12561 bp Feature: domain Description: rpsA Location: 10828-12445 bp Feature: domain Description: rpsA Location: 1 0828-1 2445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: QRSY01000060.1 Bacteroides ovatus strain AF29-12 AF29-12.Scaf60, whole genome shotgun sequence (2419 bp)
Overview 1 RT 1: 122-1397 bp Neighborhood of RT #1 [122, 1774] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: RT Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRSY01000053.1 Bacteroides ovatus strain AF29-12 AF29-12.Scaf53, whole genome shotgun sequence (4261 bp)
Overview 1 RT 1: 1-4176 bp Neighborhood of RT #1 [1, 4205] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3876 Feature: gene Location: 1-903 bp Feature: domain Description: Bac_Flav_CT_G Location: 4-340 bp Feature: domain Description: Bac_Flav_CT_G Location: 4-3 40 bp Feature: domain Description: Bac_Flav_CT_G Location: 352-904 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 52-904 bp Feature: gene Location: 1453-3279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1738-2560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173 8-2560 bp Feature: domain Description: Intron_maturas2 Location: 2632-2956 bp Feature: domain Description: Intron_maturas2 Location: 263 2-2956 bp Feature: domain Description: HNHc Note: nucleases Location: 3109-3256 bp Feature: domain Description: HNHc Note: nucleases Location: 3 109-3 256 bp Feature: gene Location: 3391-3837 bp Feature: domain Description: Bac_Flav_CT_G Location: 3394-3811 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 3 94-3 811 bp Feature: gene Location: 3849-4205 bp Feature: domain Description: DUF3876 Location: 3909-4176 bp Feature: domain Description: DUF3 876 Location: 3 909-4176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)

Seq: QRSY01000037.1 Bacteroides ovatus strain AF29-12 AF29-12.Scaf37, whole genome shotgun sequence (45137 bp)
Overview 1 RT 1: 165-11548 bp Neighborhood of RT #1 [165, 11548] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 165-1310 bp Feature: domain Description: Arm-DNA-bind_5 Location: 189-435 bp Feature: domain Description: Arm-DNA-bind_5 Location: 189-4 35 bp Feature: domain Description: Phage_int_SAM_5 Location: 474-759 bp Feature: domain Description: Phage_int_SAM_5 Location: 4 74 -759 bp Feature: domain Description: INTN1_C_like Location: 798-1272 bp Feature: domain Description: INTN1_C_like Location: 798-1272 bp Feature: gene Location: 1360-1854 bp Feature: gene Location: 1856-3151 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2072-2663 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2072-2663 bp Feature: gene Location: 3584-10372 bp Feature: domain Description: Laminin_G_3 Location: 6020-6401 bp Feature: domain Description: Laminin_G_3 Location: 6020-64 01 bp Feature: domain Description: pfam08757 Location: 7196-7520 bp Feature: domain Description: pfam08757 Location: 7196-7520 bp Feature: domain Description: LRR_AMN1 Location: 8126-8597 bp Feature: domain Description: LRR_AMN1 Location: 8126-8597 bp Feature: gene Location: 10382-11548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)