myRT

myRT report for GCA_003457815.1_ASM345781v1

Download annotations/find similar RTs

Seq: QRTE01000010.1 Bacteroides thetaiotaomicron strain AF28-2 AF28-2.Scaf10, whole genome shotgun sequence (255956 bp)
Overview 1 RT 1: 208581-212526 bp Neighborhood of RT #1 [208581, 212526] KOG1378 RVT-GII RVT-GII GIIM Feature: gene Location: 208581-209750 bp Ori: RGQ42057.1 Feature: domain Description: KOG1378 Location: 208692-209604 bp Feature: domain Description: KOG1 378 Location: 208692-209604 bp Feature: gene Location: 210088-210345 bp Feature: gene Location: 210635-211123 bp Ori: RGQ42059.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210971-211109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 0971 -21 1 1 09 bp Feature: gene Location: 211126-211815 bp Ori: RGQ42060.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211147-211546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 1 47-21 1 546 bp Feature: domain Description: GIIM Note: maturase Location: 211561-211792 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 561 -21 1 792 bp Feature: gene Location: 211915-212172 bp Feature: gene Location: 212308-212526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1378 (KOG1378, Purple acid phosphatase ), RVT-GII, GIIM (pfam08388)

Seq: QRTE01000001.1 Bacteroides thetaiotaomicron strain AF28-2 AF28-2.Scaf1, whole genome shotgun sequence (471582 bp)
Overview 1 RT 1: 152552-159017 bp Neighborhood of RT #1 [152552, 159017] Ribosomal_L34 PRK00529 RVT-GII GIIM ALP Feature: gene Location: 152552-152713 bp Ori: RGQ45441.1 Feature: domain Description: Ribosomal_L34 Location: 152555-152684 bp Feature: domain Description: Ribosomal_L34 Location: 152 555-152 684 bp Feature: gene Location: 152906-153472 bp Ori: RGQ45442.1 Gene: efp Feature: domain Description: PRK00529 Location: 152909-153467 bp Feature: domain Description: PRK0052 9 Location: 152 909-153467 bp Feature: gene Location: 153587-154990 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153923-154538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15392 3-154538 bp Feature: domain Description: GIIM Note: maturase Location: 154598-154826 bp Feature: domain Description: GIIM Note: maturase Location: 154598-15482 6 bp Feature: gene Location: 155500-156903 bp Ori: RGQ45443.1 Feature: domain Description: ALP Location: 155569-156895 bp Feature: domain Description: ALP Location: 155569-156895 bp Feature: gene Location: 157269-159017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ribosomal_L34 (pfam00468), PRK00529 (elongation factor P; Validated), RVT-GII, GIIM (pfam08388), ALP (pfam17527)

Seq: QRTE01000009.1 Bacteroides thetaiotaomicron strain AF28-2 AF28-2.Scaf9, whole genome shotgun sequence (261745 bp)
Overview 1 RT 1: 25682-29618 bp Neighborhood of RT #1 [25682, 29656] RVT-GII Intron_maturas2 Toprim_2 MobC Feature: gene Location: 25682-25849 bp Feature: gene Location: 25955-26374 bp Feature: gene Location: 26409-28217 bp Ori: RGQ42190.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26673-27495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26673 -27495 bp Feature: domain Description: Intron_maturas2 Location: 27591-27876 bp Feature: domain Description: Intron_maturas2 Location: 27591-27876 bp Feature: gene Location: 28231-29127 bp Ori: RGQ42359.1 Feature: domain Description: Toprim_2 Location: 28741-29020 bp Feature: domain Description: Toprim_2 Location: 28741-29020 bp Feature: gene Location: 29273-29656 bp Ori: RGQ42191.1 Feature: domain Description: MobC Location: 29489-29618 bp Feature: domain Description: MobC Location: 29489-29618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), MobC (pfam05713)

Seq: QRTE01000002.1 Bacteroides thetaiotaomicron strain AF28-2 AF28-2.Scaf2, whole genome shotgun sequence (470203 bp)
Overview 1 RT 1: 260887-272319 bp Neighborhood of RT #1 [260887, 272435] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 rpsA Feature: gene Location: 260887-261147 bp Feature: gene Location: 261107-263266 bp Feature: gene Location: 263472-264605 bp Ori: RGQ45053.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 263796-264348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 263796-264 34 8 bp Feature: gene Location: 264639-270467 bp Ori: RGQ45054.1 Feature: domain Description: DUF4011 Location: 265794-266307 bp Feature: domain Description: DUF4 011 Location: 265794 -266307 bp Feature: domain Description: DEXXQc_SF1 Location: 266646-267237 bp Feature: domain Description: DEXXQc_SF1 Location: 26664 6-267237 bp Feature: domain Description: DEXXQc_SF1 Location: 268083-268833 bp Feature: domain Description: DEXXQc_SF1 Location: 268083-268833 bp Feature: domain Description: SF1_C_Upf1 Location: 268842-269355 bp Feature: domain Description: SF1_C_Upf1 Location: 26884 2-269355 bp Feature: domain Description: MTES_1575 Location: 269505-269793 bp Feature: domain Description: MTES_1575 Location: 269505-269793 bp Feature: domain Description: DUF3320 Location: 269973-270117 bp Feature: domain Description: DUF3320 Location: 269973-270117 bp Feature: gene Location: 270636-272435 bp Ori: RGQ45055.1 Feature: domain Description: rpsA Location: 270705-272319 bp Feature: domain Description: rpsA Location: 270705-272319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QRTE01000008.1 Bacteroides thetaiotaomicron strain AF28-2 AF28-2.Scaf8, whole genome shotgun sequence (274930 bp)
Overview 1 RT 1: 218875-230260 bp Neighborhood of RT #1 [218875, 230260] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 218875-220020 bp Ori: RGQ42652.1 Feature: domain Description: Arm-DNA-bind_5 Location: 218899-219145 bp Feature: domain Description: Arm-DNA-bind_5 Location: 218899-219145 bp Feature: domain Description: Phage_int_SAM_5 Location: 219184-219469 bp Feature: domain Description: Phage_int_SAM_5 Location: 219184-219469 bp Feature: domain Description: INTN1_C_like Location: 219508-219982 bp Feature: domain Description: INTN1_C_like Location: 2195 08-219982 bp Feature: gene Location: 220072-220566 bp Feature: gene Location: 220568-221863 bp Ori: RGQ42723.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 220784-221375 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 220784-221375 bp Feature: gene Location: 222296-229084 bp Ori: RGQ42654.1 Feature: domain Description: Laminin_G_3 Location: 224732-225113 bp Feature: domain Description: Laminin_G_3 Location: 224732-225 113 bp Feature: domain Description: pfam08757 Location: 225908-226232 bp Feature: domain Description: pfam0875 7 Location: 225 908-226232 bp Feature: domain Description: LRR_AMN1 Location: 226844-227288 bp Feature: domain Description: LRR_AMN1 Location: 226844-227288 bp Feature: gene Location: 229094-230260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)