myRT

myRT report for GCA_003457855.1_ASM345785v1

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Seq: QRTJ01000056.1 [Ruminococcus] gnavus strain AF27-4BH AF27-4BH.Scaf56, whole genome shotgun sequence (15511 bp)
Overview 1 RT 1: 1-10987 bp Neighborhood of RT #1 [1, 11193] RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 PRK07726 Feature: gene Location: 1-381 bp Feature: gene Location: 510-2288 bp Ori: RGQ59517.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771 -1 563 bp Feature: domain Description: Intron_maturas2 Location: 1668-1884 bp Feature: domain Description: Intron_maturas2 Location: 1 668-1 884 bp Feature: domain Description: HNHc Note: nucleases Location: 2064-2250 bp Feature: domain Description: HNHc Note: nucleases Location: 2064-2250 bp Feature: gene Location: 2800-9090 bp Feature: domain Description: N6_Mtase Location: 5935-6520 bp Feature: domain Description: N6_Mtase Location: 5935-6520 bp Feature: domain Description: COG4646 Location: 6577-8953 bp Feature: domain Description: COG4646 Location: 6577-8953 bp Feature: gene Location: 9112-11193 bp Ori: RGQ59518.1 Feature: domain Description: PRK07726 Location: 9115-10987 bp Feature: domain Description: PRK07726 Location: 91 1 5-1 0987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), PRK07726 (DNA topoisomerase 3)

Seq: QRTJ01000006.1 [Ruminococcus] gnavus strain AF27-4BH AF27-4BH.Scaf6, whole genome shotgun sequence (120781 bp)
Overview 1 RT 1: 745-4557 bp Neighborhood of RT #1 [745, 4557] RVT-GII AAA_10 Feature: gene Location: 745-2571 bp Ori: RGQ69912.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: gene Location: 2606-3604 bp Feature: domain Description: AAA_10 Location: 2687-3590 bp Feature: domain Description: AAA_10 Location: 2 687-3590 bp Feature: gene Location: 3615-4557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846)

Seq: QRTJ01000027.1 [Ruminococcus] gnavus strain AF27-4BH AF27-4BH.Scaf27, whole genome shotgun sequence (44489 bp)
Overview 1 RT 1: 9750-16641 bp Neighborhood of RT #1 [9750, 16664] DUF961 SpaA SpaA SpaA SpaA TQ TQ TQ RVT-UG14 RVT-UG14 HipB Acetyltransf_10 Feature: gene Location: 9750-10076 bp Ori: RGQ65130.1 Feature: domain Description: DUF961 Location: 9762-10053 bp Feature: domain Description: DUF961 Location: 9762-10053 bp Feature: gene Location: 10264-13680 bp Ori: RGQ65131.1 Feature: domain Description: SpaA Location: 10924-11113 bp Feature: domain Description: SpaA Location: 10924-11113 bp Feature: domain Description: SpaA Location: 11218-11491 bp Feature: domain Description: SpaA Location: 11218-11491 bp Feature: domain Description: SpaA Location: 11677-11923 bp Feature: domain Description: SpaA Location: 11677-11923 bp Feature: domain Description: SpaA Location: 12013-12298 bp Feature: domain Description: SpaA Location: 12013 -12298 bp Feature: domain Description: TQ Location: 12361-12727 bp Feature: domain Description: TQ Location: 123 61-12727 bp Feature: domain Description: TQ Location: 12748-13111 bp Feature: domain Description: TQ Location: 12748-13 111 bp Feature: domain Description: TQ Location: 13135-13504 bp Feature: domain Description: TQ Location: 13 13 5-13 504 bp Feature: gene Location: 14045-15598 bp Ori: RGQ65132.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 14393-14465 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 143 93 -14465 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 14480-14753 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 14480-14753 bp Feature: gene Location: 15588-16166 bp Ori: RGQ65133.1 Feature: domain Description: HipB Location: 15597-15819 bp Feature: domain Description: HipB Location: 15597-15819 bp Feature: gene Location: 16191-16664 bp Ori: RGQ65134.1 Feature: domain Description: Acetyltransf_10 Location: 16335-16641 bp Feature: domain Description: Acetyltransf_10 Location: 163 3 5-16641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), SpaA (pfam17802), TQ (pfam18202), RVT-UG14, HipB (COG1396), Acetyltransf_10 (pfam13673)

Seq: QRTJ01000102.1 [Ruminococcus] gnavus strain AF27-4BH AF27-4BH.Scaf102, whole genome shotgun sequence (2744 bp)
Overview 1 RT 1: 126-1146 bp Neighborhood of RT #1 [126, 2009] RVT-GII Feature: gene Location: 126-2009 bp Ori: RGQ56446.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 444-1146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 4 -114 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QRTJ01000019.1 [Ruminococcus] gnavus strain AF27-4BH AF27-4BH.Scaf19, whole genome shotgun sequence (56621 bp)
Overview 1 RT 1: 7173-13831 bp Neighborhood of RT #1 [7173, 13839] AraC Acetyltransf_1 lant_SP_1948 RVT-GII Tra8 LanM-like Feature: gene Location: 7173-8027 bp Ori: RGQ66334.1 Feature: domain Description: AraC Location: 7203-7503 bp Feature: domain Description: AraC Location: 7203-75 03 bp Feature: domain Description: Acetyltransf_1 Location: 7614-7857 bp Feature: domain Description: Acetyltransf_1 Location: 7614-785 7 bp Feature: gene Location: 8642-8824 bp Ori: RGQ66335.1 Feature: domain Description: lant_SP_1948 Location: 8699-8777 bp Feature: domain Description: lant_SP_1948 Location: 8699-8777 bp Feature: gene Location: 9149-9833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9161-9374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9161-9374 bp Feature: gene Location: 9770-10408 bp Feature: domain Description: Tra8 Location: 9866-10313 bp Feature: domain Description: Tra8 Location: 9866-10313 bp Feature: gene Location: 10810-13839 bp Ori: RGQ66336.1 Gene: lanM Feature: domain Description: LanM-like Location: 11266-13831 bp Feature: domain Description: LanM-like Location: 11266-13831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC (COG2207), Acetyltransf_1 (pfam00583), lant_SP_1948 (TIGR03893), RVT-GII, Tra8 (COG2826), LanM-like (cd04792)