myRT

myRT report for GCA_003457865.1_ASM345786v1

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Seq: QRTL01000005.1 Bacteroides plebeius strain AF27-30 AF27-30.Scaf5, whole genome shotgun sequence (218892 bp)
Overview 1 RT 1: 23387-30745 bp Neighborhood of RT #1 [23387, 30789] HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-UG24 dnaG Feature: gene Location: 23387-23665 bp Ori: RGQ74652.1 Feature: domain Description: HTH_17 Location: 23507-23654 bp Feature: domain Description: HTH_1 7 Location: 23507-23654 bp Feature: gene Location: 23926-25131 bp Ori: RGQ74653.1 Feature: domain Description: Arm-DNA-bind_5 Location: 23959-24175 bp Feature: domain Description: Arm-DNA-bind_5 Location: 23959-241 75 bp Feature: domain Description: Phage_int_SAM_5 Location: 24313-24547 bp Feature: domain Description: Phage_int_SAM_5 Location: 2431 3-24547 bp Feature: domain Description: INTN1_C_like Location: 24613-25117 bp Feature: domain Description: INTN1 _C_like Location: 2461 3-251 1 7 bp Feature: gene Location: 25569-29006 bp Ori: RGQ74654.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 26079-26544 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 26079-26544 bp Feature: gene Location: 29008-29748 bp Feature: gene Location: 29755-30789 bp Ori: RGQ74656.1 Feature: domain Description: dnaG Location: 29842-30745 bp Feature: domain Description: dnaG Location: 29842-30745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-UG24, dnaG (TIGR01391)

Seq: QRTL01000042.1 Bacteroides plebeius strain AF27-30 AF27-30.Scaf42, whole genome shotgun sequence (25207 bp)
Overview 1 RT 1: 11538-16663 bp Neighborhood of RT #1 [11538, 16663] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 11538-12941 bp Feature: gene Location: 13224-14135 bp Ori: RGQ67900.1 Feature: domain Description: Toprim_2 Location: 13758-14046 bp Feature: domain Description: Toprim_2 Location: 13758-14046 bp Feature: gene Location: 14125-15933 bp Ori: RGQ67901.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14389-15211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14389-152 11 bp Feature: domain Description: Intron_maturas2 Location: 15280-15589 bp Feature: domain Description: Intron_maturas2 Location: 152 80-15589 bp Feature: gene Location: 15968-16391 bp Feature: gene Location: 16496-16663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRTL01000051.1 Bacteroides plebeius strain AF27-30 AF27-30.Scaf51, whole genome shotgun sequence (17338 bp)
Overview 1 RT 1: 4345-7384 bp 2 RT 2: 14454-17338 bp Neighborhood of RT #1 [4345, 7428] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Neighborhood of RT #2 [14454, 17338] Bac_Flav_CT_N RVT-GII Intron_maturas2 Feature: gene Location: 4345-4575 bp Ori: RGQ66603.1 Feature: domain Description: DUF4134 Location: 4381-4561 bp Feature: domain Description: DUF413 4 Location: 43 81-4561 bp Feature: gene Location: 4596-4895 bp Feature: gene Location: 5191-6846 bp Ori: RGQ66605.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5248-5485 bp Feature: domain Description: RVT_N Location: 5248-5485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5536-6184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553 6-6184 bp Feature: domain Description: GIIM Note: maturase Location: 6241-6472 bp Feature: domain Description: GIIM Note: maturase Location: 6241-6472 bp Feature: gene Location: 6843-7085 bp Ori: RGQ66606.1 Feature: domain Description: DUF4134 Location: 6990-7080 bp Feature: domain Description: DUF413 4 Location: 6990-7080 bp Feature: gene Location: 7096-7428 bp Ori: RGQ66607.1 Feature: domain Description: DUF4133 Location: 7114-7384 bp Feature: domain Description: DUF413 3 Location: 7114-73 84 bp Feature: gene Location: 14454-14879 bp Ori: RGQ66614.1 Feature: domain Description: Bac_Flav_CT_N Location: 14457-14859 bp Feature: domain Description: Bac_Flav_CT_N Location: 14457-14859 bp Feature: gene Location: 14898-15385 bp Feature: gene Location: 15420-17231 bp Ori: RGQ66615.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15684-16506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15684-16506 bp Feature: domain Description: Intron_maturas2 Location: 16575-16884 bp Feature: domain Description: Intron_maturas2 Location: 16575-16884 bp Feature: gene Location: 17203-17338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_N (TIGR03780), Intron_maturas2 (pfam01348)