myRT

myRT report for GCA_003457925.1_ASM345792v1

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Seq: QRTH01000001.1 Bacteroides uniformis strain AF28-11 AF28-11.Scaf1, whole genome shotgun sequence (1039341 bp)
Overview 1 RT 1: 369307-376853 bp 2 RT 2: 394011-398416 bp 3 RT 3: 777557-782682 bp Neighborhood of RT #1 [369307, 376852] COG4646 matK RVT-GII Intron_maturas2 N6_Mtase COG4646 Neighborhood of RT #2 [394011, 398445] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Neighborhood of RT #3 [777557, 782682] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 369307-370329 bp Feature: gene Location: 370411-371895 bp Feature: domain Description: COG4646 Location: 370414-371317 bp Feature: domain Description: COG4646 Location: 37041 4-371 31 7 bp Feature: gene Location: 372011-373813 bp Ori: RGQ54710.1 Feature: domain Description: matK Location: 372080-372167 bp Feature: domain Description: matK Location: 372080-3721 67 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372275-373097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372275-373097 bp Feature: domain Description: Intron_maturas2 Location: 373247-373481 bp Feature: domain Description: Intron_maturas2 Location: 373247-373481 bp Feature: gene Location: 373820-374275 bp Feature: gene Location: 374378-376852 bp Feature: domain Description: N6_Mtase Location: 374585-374975 bp Feature: domain Description: N6_Mtase Location: 374585-374975 bp Feature: domain Description: COG4646 Location: 375992-376853 bp Feature: domain Description: COG4646 Location: 375992-376853 bp Feature: gene Location: 394011-394286 bp Feature: gene Location: 394291-394449 bp Ori: RGQ54728.1 Feature: domain Description: DUF4141 Location: 394306-394447 bp Feature: domain Description: DUF41 41 Location: 394306-394447 bp Feature: gene Location: 395039-396874 bp Ori: RGQ54729.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395333-396155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395333-3961 55 bp Feature: domain Description: Intron_maturas2 Location: 396314-396683 bp Feature: domain Description: Intron_maturas2 Location: 39631 4-396683 bp Feature: domain Description: HNHc Note: nucleases Location: 396707-396848 bp Feature: domain Description: HNHc Note: nucleases Location: 396707-396848 bp Feature: gene Location: 397092-397403 bp Feature: gene Location: 397432-398445 bp Ori: RGQ54730.1 Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 397453-398416 bp Feature: domain Description: Bac_Flav_CT_J Location: 397453-39841 6 bp Feature: gene Location: 777557-778960 bp Feature: gene Location: 779243-780154 bp Ori: RGQ54997.1 Feature: domain Description: Toprim_2 Location: 779777-780065 bp Feature: domain Description: Toprim_2 Location: 779777-780065 bp Feature: gene Location: 780144-781952 bp Ori: RGQ54998.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780408-781230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780408-781 230 bp Feature: domain Description: Intron_maturas2 Location: 781299-781608 bp Feature: domain Description: Intron_maturas2 Location: 781 299-781 608 bp Feature: gene Location: 781987-782410 bp Feature: gene Location: 782515-782682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), N6_Mtase (pfam02384), DUF4141 (pfam13605), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782), Toprim_2 (pfam13155)

Seq: QRTH01000002.1 Bacteroides uniformis strain AF28-11 AF28-11.Scaf2, whole genome shotgun sequence (525364 bp)
Overview 1 RT 1: 300340-304273 bp Neighborhood of RT #1 [300340, 304273] RVT-UG27 Feature: gene Location: 300340-300819 bp Feature: gene Location: 300869-301366 bp Feature: gene Location: 301689-302951 bp Ori: RGQ53228.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 301881-302517 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 301881-302 517 bp Feature: gene Location: 302944-303612 bp Feature: gene Location: 303626-304273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRTH01000004.1 Bacteroides uniformis strain AF28-11 AF28-11.Scaf4, whole genome shotgun sequence (407839 bp)
Overview 1 RT 1: 110-3837 bp Neighborhood of RT #1 [110, 3837] RrnaAD RVT-GII GIIM Feature: gene Location: 110-910 bp Ori: RGQ51356.1 Gene: erm(F) Feature: domain Description: RrnaAD Location: 137-875 bp Feature: domain Description: RrnaAD Location: 13 7-875 bp Feature: gene Location: 929-1126 bp Feature: gene Location: 1656-2951 bp Ori: RGQ51358.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-2466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-2466 bp Feature: domain Description: GIIM Note: maturase Location: 2538-2751 bp Feature: domain Description: GIIM Note: maturase Location: 253 8-2751 bp Feature: gene Location: 3292-3495 bp Feature: gene Location: 3529-3837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RrnaAD (pfam00398), RVT-GII, GIIM (pfam08388)