myRT

myRT report for GCA_003458215.1_ASM345821v1

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Seq: QRTQ01000015.1 Bacteroides fragilis strain AF27-10 AF27-10.Scaf15, whole genome shotgun sequence (123884 bp)
Overview 1 RT 1: 69662-75597 bp Neighborhood of RT #1 [69662, 76067] Toprim_2 RVT-GII Intron_maturas2 AAA_25 Feature: gene Location: 69662-71065 bp Feature: gene Location: 71348-72259 bp Feature: domain Description: Toprim_2 Location: 71882-72170 bp Feature: domain Description: Toprim_2 Location: 71 882-721 70 bp Feature: gene Location: 72249-74057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72513-73335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7251 3-73335 bp Feature: domain Description: Intron_maturas2 Location: 73404-73713 bp Feature: domain Description: Intron_maturas2 Location: 73404-7371 3 bp Feature: gene Location: 74621-74788 bp Feature: gene Location: 75000-76067 bp Feature: domain Description: AAA_25 Location: 75135-75597 bp Feature: domain Description: AAA_25 Location: 751 35-75597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), AAA_25 (pfam13481)

Seq: QRTQ01000003.1 Bacteroides fragilis strain AF27-10 AF27-10.Scaf3, whole genome shotgun sequence (383040 bp)
Overview 1 RT 1: 374260-378364 bp Neighborhood of RT #1 [374260, 378384] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Bac_Flav_CT_N Feature: gene Location: 374260-374835 bp Feature: domain Description: TraO Location: 374335-374830 bp Feature: domain Description: TraO Location: 374335-374830 bp Feature: gene Location: 374838-375563 bp Feature: domain Description: Bac_Flav_CT_N Location: 374982-375543 bp Feature: domain Description: Bac_Flav_CT_N Location: 374982 -375543 bp Feature: gene Location: 375535-377346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375799-376621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375799-37662 1 bp Feature: domain Description: Intron_maturas2 Location: 376690-376999 bp Feature: domain Description: Intron_maturas2 Location: 376690-376999 bp Feature: gene Location: 377381-377868 bp Feature: gene Location: 377887-378384 bp Feature: domain Description: Bac_Flav_CT_N Location: 377890-377965 bp Feature: domain Description: Bac_Flav_CT_N Location: 377890-377965 bp Feature: domain Description: Bac_Flav_CT_N Location: 378100-378364 bp Feature: domain Description: Bac_Flav_CT_N Location: 378100-378364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRTQ01000006.1 Bacteroides fragilis strain AF27-10 AF27-10.Scaf6, whole genome shotgun sequence (245335 bp)
Overview 1 RT 1: 36986-45945 bp Neighborhood of RT #1 [36986, 45953] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 36986-39175 bp Feature: domain Description: GlnA3 Location: 37061-39173 bp Feature: domain Description: GlnA3 Location: 3 7061-3 9173 bp Feature: gene Location: 39416-41635 bp Feature: gene Location: 41842-42954 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42157-42706 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42157-42706 bp Feature: gene Location: 43096-44889 bp Feature: domain Description: rpsA Location: 43174-44782 bp Feature: domain Description: rpsA Location: 43 174-44782 bp Feature: gene Location: 45039-45953 bp Feature: domain Description: RNase_Z Location: 45054-45945 bp Feature: domain Description: RNase_Z Location: 45054-45945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: QRTQ01000039.1 Bacteroides fragilis strain AF27-10 AF27-10.Scaf39, whole genome shotgun sequence (15071 bp)
Overview 1 RT 1: 1-6773 bp Neighborhood of RT #1 [1, 7156] RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 1-135 bp Feature: gene Location: 114-1787 bp Feature: RT Description: RVT_N Location: 168-411 bp Feature: RT Description: RVT_N Location: 168-4 11 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-1104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 56-1104 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1389 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1389 bp Feature: gene Location: 1753-1956 bp Feature: gene Location: 2444-7156 bp Feature: domain Description: N6_Mtase Location: 2756-3359 bp Feature: domain Description: N6_Mtase Location: 2756-3359 bp Feature: domain Description: COG4646 Location: 4703-6773 bp Feature: domain Description: COG4 64 6 Location: 4 703-6773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )