myRT

myRT report for GCA_003458235.1_ASM345823v1

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Seq: QRTS01000086.1 Bacteroides sp. AF26-7BH AF26-7BH.Scaf86, whole genome shotgun sequence (2364 bp)
Overview 1 RT 1: 1-2059 bp Neighborhood of RT #1 [1, 2220] RVT-GII GIIM Feature: gene Location: 1-366 bp Feature: gene Location: 814-2220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1156-1774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 56-1 774 bp Feature: domain Description: GIIM Note: maturase Location: 1831-2059 bp Feature: domain Description: GIIM Note: maturase Location: 1 831 -2059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRTS01000003.1 Bacteroides sp. AF26-7BH AF26-7BH.Scaf3, whole genome shotgun sequence (279542 bp)
Overview 1 RT 1: 181730-187272 bp Neighborhood of RT #1 [181730, 187340] OafA PDDEXK_2 RVT_N RVT-GII GIIM GIIM INTN1_C_like Feature: gene Location: 181730-182884 bp Feature: domain Description: OafA Location: 181763-182864 bp Feature: domain Description: OafA Location: 181763-182 864 bp Feature: gene Location: 183004-183879 bp Feature: domain Description: PDDEXK_2 Location: 183088-183742 bp Feature: domain Description: PDDEXK_2 Location: 183088-183742 bp Feature: gene Location: 183890-185587 bp Feature: RT Description: RVT_N Location: 183956-184190 bp Feature: RT Description: RVT_N Location: 183956-184190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184244-184892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1842 44-184892 bp Feature: domain Description: GIIM Note: maturase Location: 184943-185177 bp Feature: domain Description: GIIM Note: maturase Location: 184943-185177 bp Feature: domain Description: GIIM Note: maturase Location: 185255-185429 bp Feature: domain Description: GIIM Note: maturase Location: 1852 55-18542 9 bp Feature: gene Location: 186514-186867 bp Feature: gene Location: 186972-187340 bp Feature: domain Description: INTN1_C_like Location: 187143-187272 bp Feature: domain Description: INTN1_C_like Location: 187143-1872 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OafA (COG1835), PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), INTN1_C_like (cd01185)

Seq: QRTS01000002.1 Bacteroides sp. AF26-7BH AF26-7BH.Scaf2, whole genome shotgun sequence (281485 bp)
Overview 1 RT 1: 147191-150694 bp Neighborhood of RT #1 [147191, 150723] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 147191-147478 bp Feature: gene Location: 147683-147961 bp Feature: gene Location: 147924-149345 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 148299-149001 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 148299-149001 bp Feature: gene Location: 149360-149767 bp Feature: domain Description: Avd_like Location: 149393-149702 bp Feature: domain Description: Avd_like Location: 1493 93 -149702 bp Feature: gene Location: 149914-150723 bp Feature: domain Description: DUF1566 Location: 150445-150694 bp Feature: domain Description: DUF1566 Location: 150445-150694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: QRTS01000077.1 Bacteroides sp. AF26-7BH AF26-7BH.Scaf77, whole genome shotgun sequence (8243 bp)
Overview 1 RT 1: 611-5664 bp Neighborhood of RT #1 [611, 5664] RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 611-778 bp Feature: gene Location: 883-1306 bp Feature: gene Location: 1341-3149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1605-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1605-24 27 bp Feature: domain Description: Intron_maturas2 Location: 2496-2805 bp Feature: domain Description: Intron_maturas2 Location: 24 96-2805 bp Feature: gene Location: 3154-4050 bp Feature: domain Description: Toprim_2 Location: 3673-3961 bp Feature: domain Description: Toprim_2 Location: 3673-3961 bp Feature: gene Location: 4261-5664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QRTS01000022.1 Bacteroides sp. AF26-7BH AF26-7BH.Scaf22, whole genome shotgun sequence (118864 bp)
Overview 1 RT 1: 84718-96061 bp Neighborhood of RT #1 [84718, 96099] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 84718-85884 bp Feature: gene Location: 85894-92682 bp Feature: domain Description: Laminin_G_3 Location: 88330-88711 bp Feature: domain Description: Laminin_G_3 Location: 88330-88711 bp Feature: domain Description: CotH Location: 88972-90019 bp Feature: domain Description: CotH Location: 88972-90019 bp Feature: domain Description: LRR_AMN1 Location: 90436-90904 bp Feature: domain Description: LRR_AMN1 Location: 90436-90904 bp Feature: gene Location: 93116-94411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93332-93923 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93332-93923 bp Feature: gene Location: 94413-94904 bp Feature: gene Location: 94954-96099 bp Feature: domain Description: Arm-DNA-bind_5 Location: 94978-95224 bp Feature: domain Description: Arm-DNA-bind_5 Location: 94978-95 224 bp Feature: domain Description: Phage_int_SAM_5 Location: 95263-95548 bp Feature: domain Description: Phage_int_SAM_5 Location: 95 263-95 5 48 bp Feature: domain Description: INTN1_C_like Location: 95587-96061 bp Feature: domain Description: INTN1_C_like Location: 95 5 87-96061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QRTS01000028.1 Bacteroides sp. AF26-7BH AF26-7BH.Scaf28, whole genome shotgun sequence (81870 bp)
Overview 1 RT 1: 31898-44897 bp Neighborhood of RT #1 [31898, 44897] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 31898-33700 bp Feature: domain Description: rpsA Location: 31967-33584 bp Feature: domain Description: rpsA Location: 3196 7-33584 bp Feature: gene Location: 33797-39754 bp Feature: domain Description: DUF4011 Location: 35027-35540 bp Feature: domain Description: DUF4011 Location: 35027-35540 bp Feature: domain Description: DEXXQc_SF1 Location: 35879-36743 bp Feature: domain Description: DEXXQc_SF1 Location: 35879-36 743 bp Feature: domain Description: DEXXQc_SF1 Location: 37307-38066 bp Feature: domain Description: DEXXQc_SF1 Location: 37307-3806 6 bp Feature: domain Description: TIGR00376 Location: 38195-38585 bp Feature: domain Description: TIGR00376 Location: 38195-38585 bp Feature: domain Description: MTES_1575 Location: 38738-39023 bp Feature: domain Description: MTES_1575 Location: 38738-39023 bp Feature: domain Description: DUF3320 Location: 39263-39404 bp Feature: domain Description: DUF3320 Location: 3926 3-39404 bp Feature: gene Location: 39756-40886 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40077-40620 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40077-406 20 bp Feature: gene Location: 41092-43254 bp Feature: gene Location: 44418-44897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons