myRT

myRT report for GCA_003458305.1_ASM345830v1

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Seq: QRTX01000027.1 Bacteroides ovatus strain AF26-20AA AF26-20AA.Scaf27, whole genome shotgun sequence (78003 bp)
Overview 1 RT 1: 690-12966 bp Neighborhood of RT #1 [690, 13082] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 690-1514 bp Feature: domain Description: PDDEXK_2 Location: 711-1389 bp Feature: domain Description: PDDEXK_2 Location: 71 1 -1 389 bp Feature: gene Location: 1726-3888 bp Feature: gene Location: 4094-5224 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4415-4958 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 441 5-4958 bp Feature: gene Location: 5226-11183 bp Feature: domain Description: DUF4011 Location: 6456-6969 bp Feature: domain Description: DUF401 1 Location: 6456-6969 bp Feature: domain Description: DEXXQc_SF1 Location: 7308-8274 bp Feature: domain Description: DEXXQc_SF1 Location: 7308-8274 bp Feature: domain Description: DEXXQc_SF1 Location: 8736-9495 bp Feature: domain Description: DEXXQc_SF1 Location: 8736-9495 bp Feature: domain Description: TIGR00376 Location: 9627-10014 bp Feature: domain Description: TIGR00376 Location: 9627-1 001 4 bp Feature: domain Description: MTES_1575 Location: 10167-10452 bp Feature: domain Description: MTES_1 575 Location: 1 01 67-1 0452 bp Feature: domain Description: DUF3320 Location: 10692-10833 bp Feature: domain Description: DUF3320 Location: 1 0692-1 0833 bp Feature: gene Location: 11280-13082 bp Feature: domain Description: rpsA Location: 11349-12966 bp Feature: domain Description: rpsA Location: 1 1 349-1 2966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), PDDEXK_2 (pfam12784)

Seq: QRTX01000005.1 Bacteroides ovatus strain AF26-20AA AF26-20AA.Scaf5, whole genome shotgun sequence (305361 bp)
Overview 1 RT 1: 74907-78431 bp 2 RT 2: 231279-235075 bp Neighborhood of RT #1 [74907, 78431] DUF1566 Avd_like RVT-DGRs Neighborhood of RT #2 [231279, 235075] RVT-DGRs Feature: gene Location: 74907-75716 bp Feature: domain Description: DUF1566 Location: 75438-75687 bp Feature: domain Description: DUF1566 Location: 75438-75687 bp Feature: gene Location: 75856-76263 bp Feature: domain Description: Avd_like Location: 75889-76198 bp Feature: domain Description: Avd_like Location: 75889-76198 bp Feature: gene Location: 76278-77699 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 76653-77355 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 76653-77355 bp Feature: gene Location: 77662-77940 bp Feature: gene Location: 78144-78431 bp Feature: gene Location: 231279-232598 bp Feature: gene Location: 232853-233053 bp Feature: gene Location: 233115-233930 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 233448-233775 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 33448-2 33775 bp Feature: gene Location: 234311-234658 bp Feature: gene Location: 234680-235075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs