myRT

myRT report for GCA_003458445.1_ASM345844v1

Download annotations/find similar RTs

Seq: QRUI01000025.1 Bacteroides plebeius strain AF25-1LB AF25-1LB.Scaf25, whole genome shotgun sequence (51039 bp)
Overview 1 RT 1: 45489-50256 bp Neighborhood of RT #1 [45489, 50256] DUF4376 RVT-DGRs Feature: gene Location: 45489-46001 bp Feature: gene Location: 45998-46705 bp Ori: RGR54242.1 Feature: domain Description: DUF4376 Location: 46364-46655 bp Feature: domain Description: DUF4376 Location: 46364-46655 bp Feature: gene Location: 46931-48403 bp Ori: RGR54243.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 47321-48014 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 47321 -4801 4 bp Feature: gene Location: 48407-48760 bp Feature: gene Location: 48838-50256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4376 (pfam14301), RVT-DGRs

Seq: QRUI01000035.1 Bacteroides plebeius strain AF25-1LB AF25-1LB.Scaf35, whole genome shotgun sequence (41445 bp)
Overview 1 RT 1: 31967-35346 bp Neighborhood of RT #1 [31967, 35346] RVT-DGRs Feature: gene Location: 31967-32314 bp Feature: gene Location: 32499-32729 bp Feature: gene Location: 32695-33510 bp Ori: RGR53180.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33028-33352 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3302 8-33352 bp Feature: gene Location: 33572-33772 bp Feature: gene Location: 34027-35346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRUI01000041.1 Bacteroides plebeius strain AF25-1LB AF25-1LB.Scaf41, whole genome shotgun sequence (38654 bp)
Overview 1 RT 1: 8210-12143 bp Neighborhood of RT #1 [8210, 12143] RVT-UG27 Feature: gene Location: 8210-8857 bp Feature: gene Location: 8871-9539 bp Feature: gene Location: 9532-10794 bp Ori: RGR52548.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 9724-10360 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 9724-103 60 bp Feature: gene Location: 11117-11614 bp Feature: gene Location: 11664-12143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRUI01000093.1 Bacteroides plebeius strain AF25-1LB AF25-1LB.Scaf93, whole genome shotgun sequence (12070 bp)
Overview 1 RT 1: 8620-12053 bp Neighborhood of RT #1 [8620, 12070] HTH_17 RVT-GII Intron_maturas2 INTN1_C_like Feature: gene Location: 8620-8925 bp Ori: RGR49475.1 Feature: domain Description: HTH_17 Location: 8758-8905 bp Feature: domain Description: HTH_17 Location: 8758-8905 bp Feature: gene Location: 9002-9364 bp Feature: gene Location: 9580-11388 bp Ori: RGR49473.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9844-10666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984 4 -10666 bp Feature: domain Description: Intron_maturas2 Location: 10792-11047 bp Feature: domain Description: Intron_maturas2 Location: 10792-1104 7 bp Feature: gene Location: 11939-12070 bp Ori: RGR49474.1 Feature: domain Description: INTN1_C_like Location: 11942-12053 bp Feature: domain Description: INTN1_C_like Location: 1194 2-12053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-GII, Intron_maturas2 (pfam01348), INTN1_C_like (cd01185)

Seq: QRUI01000102.1 Bacteroides plebeius strain AF25-1LB AF25-1LB.Scaf102, whole genome shotgun sequence (9799 bp)
Overview 1 RT 1: 1-4803 bp Neighborhood of RT #1 [1, 5273] Toprim_2 RVT-GII Intron_maturas2 AAA_25 Feature: gene Location: 1-272 bp Feature: gene Location: 554-1465 bp Ori: RGR48542.1 Feature: domain Description: Toprim_2 Location: 1088-1376 bp Feature: domain Description: Toprim_2 Location: 1088-1376 bp Feature: gene Location: 1455-3263 bp Ori: RGR48543.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1719-2541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1719-25 41 bp Feature: domain Description: Intron_maturas2 Location: 2610-2919 bp Feature: domain Description: Intron_maturas2 Location: 2610-2919 bp Feature: gene Location: 3827-3994 bp Feature: gene Location: 4206-5273 bp Ori: RGR48549.1 Feature: domain Description: AAA_25 Location: 4341-4803 bp Feature: domain Description: AAA_25 Location: 4341-4803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), AAA_25 (pfam13481)

Seq: QRUI01000122.1 Bacteroides plebeius strain AF25-1LB AF25-1LB.Scaf122, whole genome shotgun sequence (5972 bp)
Overview 1 RT 1: 190-2942 bp Neighborhood of RT #1 [190, 5410] dnaG RVT-UG24 Feature: gene Location: 190-1245 bp Ori: RGR46278.1 Feature: domain Description: dnaG Location: 277-1180 bp Feature: domain Description: dnaG Location: 277-1180 bp Feature: gene Location: 1232-1960 bp Feature: gene Location: 1973-5410 bp Ori: RGR46280.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2483-2942 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2483-2942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24

Seq: QRUI01000111.1 Bacteroides plebeius strain AF25-1LB AF25-1LB.Scaf111, whole genome shotgun sequence (7651 bp)
Overview 1 RT 1: 1-7651 bp Neighborhood of RT #1 [1, 7651] PRK13351 COG4646 Helicase_C matK RVT-GII Intron_maturas2 Feature: gene Location: 1-1583 bp Ori: RGR47602.1 Gene: tet_rib_protect Feature: domain Description: PRK13351 Location: 4-1558 bp Feature: domain Description: PRK13351 Location: 4-1558 bp Feature: gene Location: 2241-4877 bp Feature: domain Description: COG4646 Location: 2244-3366 bp Feature: domain Description: COG4646 Location: 2244-3366 bp Feature: domain Description: Helicase_C Location: 3579-3777 bp Feature: domain Description: Helicase_C Location: 357 9-37 7 7 bp Feature: gene Location: 4998-6794 bp Feature: domain Description: matK Location: 5067-5154 bp Feature: domain Description: matK Location: 5067 -5154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5262-6084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5262-6084 bp Feature: domain Description: Intron_maturas2 Location: 6234-6468 bp Feature: domain Description: Intron_maturas2 Location: 6234-6468 bp Feature: gene Location: 6801-7256 bp Feature: gene Location: 7359-7651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13351 (elongation factor G-like protein), COG4646 (Adenine-specific DNA methylase, N12 class ), Helicase_C (pfam00271), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)