myRT

myRT report for GCA_003458455.1_ASM345845v1

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Seq: QRUJ01000001.1 [Eubacterium] rectale strain AF25-15 AF25-15.Scaf1, whole genome shotgun sequence (538537 bp)
Overview 1 RT 1: 68923-74116 bp Neighborhood of RT #1 [68923, 74208] RVT-DGRs ABC_trans_CmpB Feature: gene Location: 68923-69777 bp Feature: gene Location: 69824-71467 bp Feature: gene Location: 71851-73107 bp Ori: RGR56846.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 72142-72730 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 721 42-72730 bp Feature: gene Location: 73067-73765 bp Feature: gene Location: 73765-74208 bp Ori: RGR56848.1 Feature: domain Description: ABC_trans_CmpB Location: 73870-74116 bp Feature: domain Description: ABC_trans_CmpB Location: 73870-741 1 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ABC_trans_CmpB (pfam06541)

Seq: QRUJ01000021.1 [Eubacterium] rectale strain AF25-15 AF25-15.Scaf21, whole genome shotgun sequence (46112 bp)
Overview 1 RT 1: 1250-6554 bp Neighborhood of RT #1 [1250, 6554] DDE_Tnp_1 RVT-UNC Feature: gene Location: 1250-2557 bp Ori: RGR52489.1 Feature: domain Description: DDE_Tnp_1 Location: 1574-2315 bp Feature: domain Description: DDE_Tnp_1 Location: 1574-2 315 bp Feature: gene Location: 2999-3076 bp Feature: gene Location: 4150-4350 bp Ori: RGR52490.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 4159-4306 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4159-4306 bp Feature: gene Location: 4685-5035 bp Feature: gene Location: 5046-6554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII/RVT-CRISPR/RVT-UG19/RVT-UG5(RVT-UNC)

Seq: QRUJ01000006.1 [Eubacterium] rectale strain AF25-15 AF25-15.Scaf6, whole genome shotgun sequence (200742 bp)
Overview 1 RT 1: 108544-117909 bp Neighborhood of RT #1 [108544, 117909] Cas2_I_II_III RVT-CRISPR cas1_HMARI TIR_2 Feature: gene Location: 108544-112782 bp Feature: gene Location: 112800-113060 bp Ori: RGR54905.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 112809-113037 bp Feature: domain Description: Cas2_I_II_III Location: 112809-113 03 7 bp Feature: gene Location: 113079-114974 bp Ori: RGR54906.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 113274-113847 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 113 274-113 847 bp Feature: domain Description: cas1_HMARI Location: 113988-114966 bp Feature: domain Description: cas1_HMARI Location: 113 988-114966 bp Feature: gene Location: 115749-117320 bp Ori: RGR54907.1 Feature: domain Description: TIR_2 Location: 116919-117186 bp Feature: domain Description: TIR_2 Location: 116919-117186 bp Feature: gene Location: 117604-117909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641), TIR_2 (pfam13676)

Seq: QRUJ01000010.1 [Eubacterium] rectale strain AF25-15 AF25-15.Scaf10, whole genome shotgun sequence (118803 bp)
Overview 1 RT 1: 21115-27963 bp Neighborhood of RT #1 [21115, 27983] M3B_PepF PRK12353 RVT-GII GIIM DegQ Feature: gene Location: 21115-22920 bp Ori: RGR53829.1 Gene: pepF Feature: domain Description: M3B_PepF Location: 21226-22903 bp Feature: domain Description: M3B_PepF Location: 21226-22903 bp Feature: gene Location: 23109-24041 bp Ori: RGR53830.1 Feature: domain Description: PRK12353 Location: 23118-24039 bp Feature: domain Description: PRK12353 Location: 23118-24 039 bp Feature: gene Location: 24485-25879 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24803-25427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 803-254 27 bp Feature: domain Description: GIIM Note: maturase Location: 25484-25706 bp Feature: domain Description: GIIM Note: maturase Location: 254 84 -25706 bp Feature: gene Location: 25987-26229 bp Feature: gene Location: 26373-27983 bp Ori: RGR53832.1 Feature: domain Description: DegQ Location: 26910-27963 bp Feature: domain Description: DegQ Location: 26910-27963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M3B_PepF (cd09610), PRK12353 (putative amino acid kinase; Reviewed), RVT-GII, GIIM (pfam08388), DegQ (pfam08181)