myRT

myRT report for GCA_003458625.1_ASM345862v1

Download annotations/find similar RTs

Seq: QRUZ01000020.1 [Clostridium] bolteae strain AF24-13 AF24-13.Scaf20, whole genome shotgun sequence (107326 bp)
Overview 1 RT 1: 104723-107247 bp Neighborhood of RT #1 [104723, 107326] RVT-GII Intron_maturas2 Feature: gene Location: 104723-105229 bp Feature: gene Location: 105628-105823 bp Feature: gene Location: 105789-107326 bp Ori: RGS04518.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106053-106872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 06053-1 06872 bp Feature: domain Description: Intron_maturas2 Location: 106944-107247 bp Feature: domain Description: Intron_maturas2 Location: 1 06944-1 07247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRUZ01000050.1 [Clostridium] bolteae strain AF24-13 AF24-13.Scaf50, whole genome shotgun sequence (2439 bp)
Overview 1 RT 1: 120-2328 bp Neighborhood of RT #1 [120, 2328] RVT-GII Intron_maturas2 Feature: gene Location: 120-1910 bp Ori: RGS01337.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387-12 00 bp Feature: domain Description: Intron_maturas2 Location: 1284-1581 bp Feature: domain Description: Intron_maturas2 Location: 12 84-1581 bp Feature: gene Location: 2119-2328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRUZ01000021.1 [Clostridium] bolteae strain AF24-13 AF24-13.Scaf21, whole genome shotgun sequence (98588 bp)
Overview 1 RT 1: 64127-67985 bp Neighborhood of RT #1 [64127, 67985] PBP2_TRAP_Siap HpcH RVT-GII GIIM Feature: gene Location: 64127-65221 bp Ori: RGS04087.1 Feature: domain Description: PBP2_TRAP_Siap Location: 64307-65207 bp Feature: domain Description: PBP2_TRAP_Siap Location: 643 07-65207 bp Feature: gene Location: 65236-66009 bp Ori: RGS04088.1 Feature: domain Description: HpcH Location: 65242-65992 bp Feature: domain Description: HpcH Location: 65242-65992 bp Feature: gene Location: 66239-67630 bp Ori: RGS04089.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66554-67181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66554-67181 bp Feature: domain Description: GIIM Note: maturase Location: 67235-67463 bp Feature: domain Description: GIIM Note: maturase Location: 6723 5-67463 bp Feature: gene Location: 67730-67912 bp Feature: gene Location: 67899-67985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TRAP_Siap (cd13672), HpcH (COG3836), RVT-GII, GIIM (pfam08388)

Seq: QRUZ01000019.1 [Clostridium] bolteae strain AF24-13 AF24-13.Scaf19, whole genome shotgun sequence (108341 bp)
Overview 1 RT 1: 26171-32199 bp Neighborhood of RT #1 [26171, 32237] Amidoligase_2 VirB4 RVT_N RVT-GII GIIM DUF87 KOG3824 Feature: gene Location: 26171-27232 bp Ori: RGS04629.1 Feature: domain Description: Amidoligase_2 Location: 26186-26888 bp Feature: domain Description: Amidoligase_2 Location: 26186-26888 bp Feature: gene Location: 27249-28238 bp Feature: domain Description: VirB4 Location: 27675-28134 bp Feature: domain Description: VirB4 Location: 27675-28134 bp Feature: gene Location: 28318-29991 bp Ori: RGS04630.1 Gene: ltrA Feature: domain Description: RVT_N Location: 28390-28630 bp Feature: domain Description: RVT_N Location: 28390-28630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28678-29338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28678-29338 bp Feature: domain Description: GIIM Note: maturase Location: 29389-29626 bp Feature: domain Description: GIIM Note: maturase Location: 29389-29626 bp Feature: gene Location: 30543-31388 bp Feature: domain Description: DUF87 Location: 31278-31383 bp Feature: domain Description: DUF87 Location: 31278-31383 bp Feature: gene Location: 31473-32237 bp Ori: RGS04631.1 Feature: domain Description: KOG3824 Location: 31578-32199 bp Feature: domain Description: KOG3824 Location: 31578-32199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Amidoligase_2 (pfam12224), VirB4 (COG3451), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF87 (pfam01935), KOG3824 (KOG3824, Huntingtin interacting protein HYPE )

Seq: QRUZ01000049.1 [Clostridium] bolteae strain AF24-13 AF24-13.Scaf49, whole genome shotgun sequence (2806 bp)
Overview 1 RT 1: 93-1860 bp Neighborhood of RT #1 [93, 2066] RVT-GII HNHc Feature: gene Location: 93-2066 bp Ori: RGS01389.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1167 bp Feature: domain Description: HNHc Note: nucleases Location: 1722-1860 bp Feature: domain Description: HNHc Note: nucleases Location: 1722-1860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QRUZ01000014.1 [Clostridium] bolteae strain AF24-13 AF24-13.Scaf14, whole genome shotgun sequence (152901 bp)
Overview 1 RT 1: 2984-7571 bp Neighborhood of RT #1 [2984, 7571] VirD4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2984-3304 bp Feature: gene Location: 3317-4600 bp Ori: RGS06510.1 Feature: domain Description: VirD4 Location: 3323-4496 bp Feature: domain Description: VirD4 Location: 3323-4496 bp Feature: gene Location: 4691-6508 bp Ori: RGS06511.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4955-5774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4955-5774 bp Feature: domain Description: Intron_maturas2 Location: 5846-6149 bp Feature: domain Description: Intron_maturas2 Location: 5846 -6 149 bp Feature: domain Description: HNHc Note: nucleases Location: 6329-6473 bp Feature: domain Description: HNHc Note: nucleases Location: 6 329-6 473 bp Feature: gene Location: 6474-6669 bp Feature: gene Location: 7089-7571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRUZ01000012.1 [Clostridium] bolteae strain AF24-13 AF24-13.Scaf12, whole genome shotgun sequence (177559 bp)
Overview 1 RT 1: 1-6872 bp Neighborhood of RT #1 [1, 6886] DUF4062 COG3943 AE_Prim_S_like RVT-UG10 COG3943 COG3943 Feature: gene Location: 1-220 bp Ori: RGS07214.1 Feature: domain Description: DUF4062 Location: 4-154 bp Feature: domain Description: DUF4062 Location: 4-154 bp Feature: gene Location: 753-1775 bp Ori: RGS07076.1 Feature: domain Description: COG3943 Location: 771-1743 bp Feature: domain Description: COG3943 Location: 7 7 1-17 43 bp Feature: gene Location: 2058-4049 bp Ori: RGS07077.1 Feature: domain Description: AE_Prim_S_like Location: 2250-2607 bp Feature: domain Description: AE_Prim_S_like Location: 2250-2607 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 3225-3771 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 3225-37 7 1 bp Feature: gene Location: 4523-5518 bp Ori: RGS07078.1 Feature: domain Description: COG3943 Location: 4559-5507 bp Feature: domain Description: COG3943 Location: 4559-5507 bp Feature: gene Location: 5855-6886 bp Ori: RGS07079.1 Feature: domain Description: COG3943 Location: 5900-6872 bp Feature: domain Description: COG3943 Location: 5900-687 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), COG3943 (Uncharacterized conserved protein ), AE_Prim_S_like (cl01287), RVT-UG10

Seq: QRUZ01000001.1 [Clostridium] bolteae strain AF24-13 AF24-13.Scaf1, whole genome shotgun sequence (768585 bp)
Overview 1 RT 1: 258278-262187 bp Neighborhood of RT #1 [258278, 262192] spoVFB NAT_SF YoaP RVT-Retrons UgpE Feature: gene Location: 258278-258862 bp Ori: RGS13777.1 Feature: domain Description: spoVFB Location: 258281-258851 bp Feature: domain Description: spoVFB Location: 258 28 1-258 8 51 bp Feature: gene Location: 259165-259908 bp Ori: RGS13778.1 Feature: domain Description: NAT_SF Location: 259372-259489 bp Feature: domain Description: NAT_SF Location: 259372-25948 9 bp Feature: domain Description: YoaP Location: 259771-259897 bp Feature: domain Description: YoaP Location: 259771-2598 97 bp Feature: gene Location: 259920-260927 bp Ori: RGS13779.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 260085-260640 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26008 5-260640 bp Feature: gene Location: 261148-261351 bp Feature: gene Location: 261359-262192 bp Ori: RGS13781.1 Feature: domain Description: UgpE Location: 261374-262187 bp Feature: domain Description: UgpE Location: 261374-26218 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spoVFB (PRK08305), NAT_SF (cl17182), YoaP (pfam14268), RVT-Retrons, UgpE (COG0395)