myRT

myRT report for GCA_003458845.1_ASM345884v1

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Seq: QRVU01000029.1 Dorea formicigenerans strain AF21-25 AF21-25.Scaf29, whole genome shotgun sequence (33903 bp)
Overview 1 RT 1: 18591-23090 bp Neighborhood of RT #1 [18591, 23227] DUF961 DUF3784 RVT-GII FtsK FtsK Feature: gene Location: 18591-18974 bp Ori: RGS70582.1 Feature: domain Description: DUF961 Location: 18606-18906 bp Feature: domain Description: DUF961 Location: 1 8606-1 8906 bp Feature: gene Location: 19067-19402 bp Ori: RGS70583.1 Feature: domain Description: DUF3784 Location: 19094-19355 bp Feature: domain Description: DUF3784 Location: 1 9094-1 9355 bp Feature: gene Location: 19894-21189 bp Ori: RGS70584.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20149-20839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 49-20839 bp Feature: gene Location: 21496-21732 bp Feature: gene Location: 21836-23227 bp Ori: RGS70585.1 Feature: domain Description: FtsK Location: 22505-22637 bp Feature: domain Description: FtsK Location: 22505-22637 bp Feature: domain Description: FtsK Location: 22751-23090 bp Feature: domain Description: FtsK Location: 22751 -23090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), DUF3784 (pfam12650), RVT-GII, FtsK (COG1674)

Seq: QRVU01000063.1 Dorea formicigenerans strain AF21-25 AF21-25.Scaf63, whole genome shotgun sequence (17533 bp)
Overview 1 RT 1: 128-9036 bp Neighborhood of RT #1 [128, 9065] RVT-GII HTH_30 IscR HDGYP Feature: gene Location: 128-853 bp Ori: RGS69176.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-599 bp Feature: domain Description: HTH_30 Location: 656-812 bp Feature: domain Description: HTH_30 Location: 656-812 bp Feature: gene Location: 1475-7604 bp Feature: gene Location: 7617-9065 bp Ori: RGS69177.1 Feature: domain Description: IscR Location: 7620-8019 bp Feature: domain Description: IscR Location: 762 0-8019 bp Feature: domain Description: HDGYP Location: 8238-9036 bp Feature: domain Description: HDGYP Location: 82 38-9036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_30 (pfam13556), IscR (TIGR02010), HDGYP (COG2206)

Seq: QRVU01000013.1 Dorea formicigenerans strain AF21-25 AF21-25.Scaf13, whole genome shotgun sequence (51243 bp)
Overview 1 RT 1: 47210-50987 bp Neighborhood of RT #1 [47210, 50987] COG5545 dnaG RVT-GII GIIM Feature: gene Location: 47210-48586 bp Ori: RGS72086.1 Feature: domain Description: COG5545 Location: 47291-48329 bp Feature: domain Description: COG5545 Location: 47291-483 29 bp Feature: gene Location: 48498-49136 bp Ori: RGS72087.1 Feature: domain Description: dnaG Location: 48504-48864 bp Feature: domain Description: dnaG Location: 48504-48864 bp Feature: gene Location: 49301-50719 bp Ori: RGS72088.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49652-50273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49652-50273 bp Feature: domain Description: GIIM Note: maturase Location: 50327-50552 bp Feature: domain Description: GIIM Note: maturase Location: 503 27-50552 bp Feature: gene Location: 50823-50987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5545 (Predicted P-loop ATPase and inactivated derivatives ), dnaG (TIGR01391), RVT-GII, GIIM (pfam08388)