myRT

myRT report for GCA_003458905.1_ASM345890v1

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Seq: QRTO01000030.1 Bacteroides ovatus strain AF27-16BH AF27-16BH.Scaf30, whole genome shotgun sequence (65748 bp)
Overview 1 RT 1: 11401-18349 bp 2 RT 2: 52489-56711 bp Neighborhood of RT #1 [11401, 18453] DUF3868 OmpA_C-like TPR DUF3575 RVT_N RVT-GII GIIM QdoI HTH_ARAC Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #2 [52489, 56711] RnlA_toxin RVT_N RVT-GII GIIM Feature: gene Location: 11401-12840 bp Ori: RGQ77305.1 Feature: domain Description: DUF3868 Location: 11464-11665 bp Feature: domain Description: DUF3868 Location: 1 1 464-1 1 665 bp Feature: domain Description: OmpA_C-like Location: 11947-12196 bp Feature: domain Description: OmpA_C-like Location: 1 1 947-1 21 96 bp Feature: domain Description: TPR Location: 12553-12745 bp Feature: domain Description: TPR Location: 1 2553-1 2745 bp Feature: gene Location: 12871-13473 bp Ori: RGQ77306.1 Feature: domain Description: DUF3575 Location: 12898-13468 bp Feature: domain Description: DUF3575 Location: 1 2898-1 3468 bp Feature: gene Location: 14400-15917 bp Ori: RGQ77307.1 Gene: ltrA Feature: domain Description: RVT_N Location: 14469-14712 bp Feature: domain Description: RVT_N Location: 1 4469-1 471 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14757-15402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4757-1 5402 bp Feature: domain Description: GIIM Note: maturase Location: 15456-15690 bp Feature: domain Description: GIIM Note: maturase Location: 1 5456-1 5690 bp Feature: gene Location: 16090-16947 bp Ori: RGQ77308.1 Feature: domain Description: QdoI Location: 16210-16312 bp Feature: domain Description: QdoI Location: 1 621 0-1 631 2 bp Feature: domain Description: HTH_ARAC Location: 16696-16939 bp Feature: domain Description: HTH_ARAC Location: 1 6696-1 6939 bp Feature: gene Location: 17137-18453 bp Ori: RGQ77309.1 Feature: domain Description: Phage_int_SAM_5 Location: 17467-17725 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 7467-1 7725 bp Feature: domain Description: INTN1_C_like Location: 17905-18349 bp Feature: domain Description: INTN1 _C_like Location: 1 7905-1 8349 bp Feature: gene Location: 52489-53538 bp Ori: RGQ77343.1 Feature: domain Description: RnlA_toxin Location: 52765-53437 bp Feature: domain Description: RnlA_toxin Location: 52765-53437 bp Feature: gene Location: 54309-54512 bp Feature: gene Location: 54478-56151 bp Ori: RGQ77345.1 Gene: ltrA Feature: domain Description: RVT_N Location: 54532-54775 bp Feature: domain Description: RVT_N Location: 54532-54775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54820-55468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54820-55468 bp Feature: domain Description: GIIM Note: maturase Location: 55522-55753 bp Feature: domain Description: GIIM Note: maturase Location: 55522-55753 bp Feature: gene Location: 56130-56264 bp Feature: gene Location: 56256-56711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3868 (pfam12984), OmpA_C-like (cl30079), TPR (smart00028), DUF3575 (pfam12099), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), QdoI (COG1917), HTH_ARAC (smart00342), Phage_int_SAM_5 (pfam13102)
INTN1_C_like (cd01185), RnlA_toxin (pfam15935)

Seq: QRTO01000043.1 Bacteroides ovatus strain AF27-16BH AF27-16BH.Scaf43, whole genome shotgun sequence (20296 bp)
Overview 1 RT 1: 15970-19313 bp Neighborhood of RT #1 [15970, 19699] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Feature: gene Location: 15970-16284 bp Ori: RGQ76198.1 Feature: domain Description: DUF3876 Location: 16024-16273 bp Feature: domain Description: DUF3876 Location: 1602 4-162 73 bp Feature: gene Location: 16299-18005 bp Ori: RGQ76199.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 16431-17997 bp Feature: domain Description: Bac_Flav_CT_G Location: 16431-17997 bp Feature: gene Location: 17990-19699 bp Ori: RGQ76200.1 Gene: ltrA Feature: domain Description: RVT_N Location: 18092-18335 bp Feature: domain Description: RVT_N Location: 18092 -18335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18380-19028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18380-1902 8 bp Feature: domain Description: GIIM Note: maturase Location: 19082-19313 bp Feature: domain Description: GIIM Note: maturase Location: 19082 -19313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRTO01000005.1 Bacteroides ovatus strain AF27-16BH AF27-16BH.Scaf5, whole genome shotgun sequence (326516 bp)
Overview 1 RT 1: 36511-48935 bp Neighborhood of RT #1 [36511, 49051] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 36511-36984 bp Feature: gene Location: 37695-39857 bp Feature: gene Location: 40063-41193 bp Ori: RGQ85219.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40384-40927 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 403 84-40927 bp Feature: gene Location: 41195-47152 bp Ori: RGQ85220.1 Feature: domain Description: DUF4011 Location: 42425-42938 bp Feature: domain Description: DUF4011 Location: 42425-4293 8 bp Feature: domain Description: DEXXQc_SF1 Location: 43277-44108 bp Feature: domain Description: DEXXQc_SF1 Location: 43 277-44108 bp Feature: domain Description: DEXXQc_SF1 Location: 44705-45464 bp Feature: domain Description: DEXXQc_SF1 Location: 44705-45464 bp Feature: domain Description: TIGR00376 Location: 45593-45983 bp Feature: domain Description: TIGR003 76 Location: 45593 -45983 bp Feature: domain Description: MTES_1575 Location: 46136-46421 bp Feature: domain Description: MTES_1575 Location: 4613 6-46421 bp Feature: domain Description: DUF3320 Location: 46661-46802 bp Feature: domain Description: DUF3 3 20 Location: 46661-46802 bp Feature: gene Location: 47249-49051 bp Ori: RGQ85221.1 Feature: domain Description: rpsA Location: 47318-48935 bp Feature: domain Description: rpsA Location: 473 18-4893 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QRTO01000015.1 Bacteroides ovatus strain AF27-16BH AF27-16BH.Scaf15, whole genome shotgun sequence (165725 bp)
Overview 1 RT 1: 110224-115518 bp 2 RT 2: 161026-164785 bp Neighborhood of RT #1 [110224, 115541] Hc1 DUF1738 MPTase-PolyVal RVT-GII Intron_maturas2 HNHc DUF1738 Neighborhood of RT #2 [161026, 164805] DUF5106 Thioredoxin_8 RVT-DGRs Fib_succ_major Avd_like Feature: gene Location: 110224-110400 bp Ori: RGQ81726.1 Feature: domain Description: Hc1 Location: 110245-110395 bp Feature: domain Description: Hc1 Location: 11024 5-110395 bp Feature: gene Location: 110499-112958 bp Ori: RGQ81727.1 Feature: domain Description: DUF1738 Location: 110622-110928 bp Feature: domain Description: DUF1738 Location: 110622-110928 bp Feature: domain Description: MPTase-PolyVal Location: 111096-111390 bp Feature: domain Description: MPTase-PolyVal Location: 111096-111390 bp Feature: gene Location: 112948-114759 bp Ori: RGQ81728.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113212-114034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113212-114 034 bp Feature: domain Description: Intron_maturas2 Location: 114103-114415 bp Feature: domain Description: Intron_maturas2 Location: 114 103-114 4 15 bp Feature: domain Description: HNHc Note: nucleases Location: 114586-114730 bp Feature: domain Description: HNHc Note: nucleases Location: 114 586-114 730 bp Feature: gene Location: 114772-115272 bp Feature: gene Location: 115314-115541 bp Ori: RGQ81730.1 Feature: domain Description: DUF1738 Location: 115377-115518 bp Feature: domain Description: DUF1738 Location: 115377-115518 bp Feature: gene Location: 161026-161601 bp Feature: gene Location: 161614-162651 bp Ori: RGQ81766.1 Feature: domain Description: DUF5106 Location: 161761-162217 bp Feature: domain Description: DUF5106 Location: 161761-162217 bp Feature: domain Description: Thioredoxin_8 Location: 162298-162583 bp Feature: domain Description: Thioredoxin_8 Location: 162298-162583 bp Feature: gene Location: 162704-163939 bp Ori: RGQ81767.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 162884-163607 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 162884 -163607 bp Feature: gene Location: 163933-164199 bp Ori: RGQ81768.1 Feature: domain Description: Fib_succ_major Location: 163942-164119 bp Feature: domain Description: Fib_succ_major Location: 16394 2-164 119 bp Feature: gene Location: 164452-164805 bp Ori: RGQ81769.1 Feature: domain Description: Avd_like Location: 164479-164785 bp Feature: domain Description: Avd_like Location: 164 4 79-164 785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hc1 (pfam07432), DUF1738 (pfam08401), MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF5106 (pfam17127), Thioredoxin_8 (pfam13905), RVT-DGRs, Fib_succ_major (TIGR02145)
Avd_like (cd16376)

Seq: QRTO01000006.1 Bacteroides ovatus strain AF27-16BH AF27-16BH.Scaf6, whole genome shotgun sequence (318751 bp)
Overview 1 RT 1: 8983-13594 bp Neighborhood of RT #1 [8983, 13635] RVT-UG12 PRK10276 VRR_NUC Feature: gene Location: 8983-9546 bp Feature: gene Location: 9834-10097 bp Feature: gene Location: 10413-12314 bp Ori: RGQ84763.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 10773-11265 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 10773-11265 bp Feature: gene Location: 12803-13009 bp Feature: domain Description: PRK10276 Location: 12824-13010 bp Feature: domain Description: PRK10276 Location: 12824-13010 bp Feature: gene Location: 13231-13635 bp Ori: RGQ84764.1 Feature: domain Description: VRR_NUC Location: 13366-13594 bp Feature: domain Description: VRR_NUC Location: 13366-135 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), VRR_NUC (smart00990)

Seq: QRTO01000023.1 Bacteroides ovatus strain AF27-16BH AF27-16BH.Scaf23, whole genome shotgun sequence (102209 bp)
Overview 1 RT 1: 82406-91762 bp Neighborhood of RT #1 [82406, 91839] INTN1_C_like RVT-GII Phage_int_SAM_4 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII Arm-DNA-bind_5 INTN1_C_like Feature: gene Location: 82406-83221 bp Ori: RGQ78932.1 Feature: domain Description: INTN1_C_like Location: 82754-83189 bp Feature: domain Description: INTN1_C_like Location: 82754-83189 bp Feature: gene Location: 83800-84264 bp Feature: gene Location: 84471-85120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84474-84705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84474-84705 bp Feature: gene Location: 85273-86496 bp Ori: RGQ78949.1 Feature: domain Description: Phage_int_SAM_4 Location: 85618-85849 bp Feature: domain Description: Phage_int_SAM_4 Location: 856 18-85849 bp Feature: domain Description: INT_RitA_C_like Location: 85939-86476 bp Feature: domain Description: INT_RitA_C_like Location: 85939-86 476 bp Feature: gene Location: 86493-86738 bp Feature: gene Location: 86742-87506 bp Ori: RGQ78935.1 Feature: domain Description: INT_RitB_C_like Location: 86823-87426 bp Feature: domain Description: INT_RitB_C_like Location: 86 823-87426 bp Feature: gene Location: 87490-88491 bp Feature: domain Description: Phage_int_SAM_1 Location: 87535-87781 bp Feature: domain Description: Phage_int_SAM_1 Location: 87535-87781 bp Feature: domain Description: INT_RitC_C_like Location: 87871-88414 bp Feature: domain Description: INT_RitC_C_like Location: 87871-88414 bp Feature: gene Location: 88495-89226 bp Ori: RGQ78936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88741-89128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88741-89128 bp Feature: gene Location: 89824-90421 bp Feature: gene Location: 90652-91839 bp Feature: domain Description: Arm-DNA-bind_5 Location: 90661-90838 bp Feature: domain Description: Arm-DNA-bind_5 Location: 906 6 1-90838 bp Feature: domain Description: INTN1_C_like Location: 91603-91762 bp Feature: domain Description: INTN1_C_like Location: 916 03-9176 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), RVT-GII, Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), Arm-DNA-bind_5 (pfam17293)

Seq: QRTO01000033.1 Bacteroides ovatus strain AF27-16BH AF27-16BH.Scaf33, whole genome shotgun sequence (44905 bp)
Overview 1 RT 1: 11580-17985 bp Neighborhood of RT #1 [11580, 17985] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 11580-12647 bp Ori: RGQ76896.1 Feature: domain Description: AAA_25 Location: 11715-12177 bp Feature: domain Description: AAA_25 Location: 117 15-1217 7 bp Feature: gene Location: 12859-13026 bp Feature: gene Location: 13590-15398 bp Ori: RGQ76897.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13854-14676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13854-1467 6 bp Feature: domain Description: Intron_maturas2 Location: 14745-15054 bp Feature: domain Description: Intron_maturas2 Location: 147 45-15054 bp Feature: gene Location: 15388-16299 bp Ori: RGQ76898.1 Feature: domain Description: Toprim_2 Location: 15922-16210 bp Feature: domain Description: Toprim_2 Location: 15922-16210 bp Feature: gene Location: 16582-17985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)