myRT

myRT report for GCA_003458915.1_ASM345891v1

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Seq: QRTR01000070.1 Bacteroides plebeius strain AF27-1 AF27-1.Scaf70, whole genome shotgun sequence (2488 bp)
Overview 1 RT 1: 115-2381 bp Neighborhood of RT #1 [115, 2381] RVT-GII Intron_maturas2 Feature: gene Location: 115-1923 bp Ori: RGQ88011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1 201 bp Feature: domain Description: Intron_maturas2 Location: 1270-1579 bp Feature: domain Description: Intron_maturas2 Location: 1 270-1 579 bp Feature: gene Location: 1958-2381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRTR01000071.1 Bacteroides plebeius strain AF27-1 AF27-1.Scaf71, whole genome shotgun sequence (2482 bp)
Overview 1 RT 1: 42-2482 bp Neighborhood of RT #1 [42, 2482] RVT-GII Intron_maturas2 Feature: gene Location: 42-529 bp Feature: gene Location: 564-2375 bp Ori: RGQ88009.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 8-1650 bp Feature: domain Description: Intron_maturas2 Location: 1719-2028 bp Feature: domain Description: Intron_maturas2 Location: 1719-2 02 8 bp Feature: gene Location: 2347-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRTR01000055.1 Bacteroides plebeius strain AF27-1 AF27-1.Scaf55, whole genome shotgun sequence (14905 bp)
Overview 1 RT 1: 7478-10547 bp Neighborhood of RT #1 [7478, 10561] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 7478-7810 bp Ori: RGQ88407.1 Feature: domain Description: DUF4133 Location: 7496-7766 bp Feature: domain Description: DUF413 3 Location: 7496-7766 bp Feature: gene Location: 7821-8063 bp Ori: RGQ88408.1 Feature: domain Description: DUF4134 Location: 7968-8058 bp Feature: domain Description: DUF413 4 Location: 7968-8058 bp Feature: gene Location: 8060-9715 bp Ori: RGQ88409.1 Gene: ltrA Feature: domain Description: RVT_N Location: 8117-8354 bp Feature: domain Description: RVT_N Location: 8117-83 54 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8405-9053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8405-9053 bp Feature: domain Description: GIIM Note: maturase Location: 9110-9341 bp Feature: domain Description: GIIM Note: maturase Location: 9110-93 41 bp Feature: gene Location: 10011-10310 bp Feature: gene Location: 10331-10561 bp Ori: RGQ88411.1 Feature: domain Description: DUF4134 Location: 10367-10547 bp Feature: domain Description: DUF413 4 Location: 103 67-10547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRTR01000012.1 Bacteroides plebeius strain AF27-1 AF27-1.Scaf12, whole genome shotgun sequence (95456 bp)
Overview 1 RT 1: 23381-30739 bp Neighborhood of RT #1 [23381, 30783] HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-UG24 dnaG Feature: gene Location: 23381-23659 bp Ori: RGQ93173.1 Feature: domain Description: HTH_17 Location: 23501-23648 bp Feature: domain Description: HTH_17 Location: 23501-2364 8 bp Feature: gene Location: 23920-25125 bp Ori: RGQ93174.1 Feature: domain Description: Arm-DNA-bind_5 Location: 23953-24169 bp Feature: domain Description: Arm-DNA-bind_5 Location: 23953-24 169 bp Feature: domain Description: Phage_int_SAM_5 Location: 24307-24541 bp Feature: domain Description: Phage_int_SAM_5 Location: 24 307-24 54 1 bp Feature: domain Description: INTN1_C_like Location: 24607-25111 bp Feature: domain Description: INTN1_C_like Location: 24 607-25111 bp Feature: gene Location: 25563-29000 bp Ori: RGQ93175.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 26073-26538 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 26073-26538 bp Feature: gene Location: 29002-29742 bp Feature: gene Location: 29749-30783 bp Ori: RGQ93177.1 Feature: domain Description: dnaG Location: 29836-30739 bp Feature: domain Description: dnaG Location: 29836-30739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-UG24, dnaG (TIGR01391)