myRT

myRT report for GCA_003459015.1_ASM345901v1

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Seq: QRUG01000011.1 Clostridium butyricum strain AF25-25 AF25-25.Scaf11, whole genome shotgun sequence (145715 bp)
Overview 1 RT 1: 138683-143340 bp Neighborhood of RT #1 [138683, 143357] TraX GalU RVT-GII COG3666 DDE_Tnp_1_6 COG4870 Feature: gene Location: 138683-139501 bp Ori: RGR45547.1 Feature: domain Description: TraX Location: 138713-139484 bp Feature: domain Description: TraX Location: 1 3871 3-1 39484 bp Feature: gene Location: 139810-140709 bp Ori: RGR45552.1 Gene: galU Feature: domain Description: GalU Location: 139819-140677 bp Feature: domain Description: GalU Location: 1 3981 9-1 40677 bp Feature: gene Location: 140885-141394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141185-141395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 1 85-1 41 395 bp Feature: gene Location: 141389-142066 bp Feature: domain Description: COG3666 Location: 141446-141770 bp Feature: domain Description: COG3666 Location: 1 41 446-1 41 770 bp Feature: domain Description: DDE_Tnp_1_6 Location: 141932-142064 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 41 932-1 42064 bp Feature: gene Location: 142518-143357 bp Ori: RGR45548.1 Feature: domain Description: COG4870 Location: 142632-143340 bp Feature: domain Description: COG4870 Location: 1 42632-1 43340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraX (pfam05857), GalU (COG1210), RVT-GII, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), COG4870 (Cysteine protease, C1A family )

Seq: QRUG01000012.1 Clostridium butyricum strain AF25-25 AF25-25.Scaf12, whole genome shotgun sequence (136483 bp)
Overview 1 RT 1: 46614-54150 bp Neighborhood of RT #1 [46614, 54170] HTH_BmrR BltR2 MoaF MoaF_C RVT-UG5 nitrilase PinE RES Feature: gene Location: 46614-47447 bp Ori: RGR45265.1 Feature: domain Description: HTH_BmrR Location: 46653-46977 bp Feature: domain Description: HTH_BmrR Location: 46653-46977 bp Feature: domain Description: BltR2 Location: 47145-47436 bp Feature: domain Description: BltR2 Location: 47145-47436 bp Feature: gene Location: 47455-48282 bp Ori: RGR45266.1 Feature: domain Description: MoaF Location: 47479-47803 bp Feature: domain Description: MoaF Location: 47479-47803 bp Feature: domain Description: MoaF_C Location: 47926-48268 bp Feature: domain Description: MoaF_C Location: 4792 6-482 68 bp Feature: gene Location: 49136-52123 bp Ori: RGR45267.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 49637-50147 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 49637-50147 bp Feature: domain Description: nitrilase Location: 51308-51971 bp Feature: domain Description: nitrilase Location: 51308-51971 bp Feature: gene Location: 52423-53028 bp Ori: RGR45268.1 Feature: domain Description: PinE Location: 52429-52996 bp Feature: domain Description: PinE Location: 52 42 9-52 996 bp Feature: gene Location: 53103-54170 bp Ori: RGR45269.1 Feature: domain Description: RES Location: 53637-54150 bp Feature: domain Description: RES Location: 53637-54150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_BmrR (cd01107), BltR2 (COG4978), MoaF (pfam10703), MoaF_C (pfam17409), RVT-UG5, nitrilase (cl11424), PinE (COG1961), RES (smart00953)

Seq: QRUG01000003.1 Clostridium butyricum strain AF25-25 AF25-25.Scaf3, whole genome shotgun sequence (261963 bp)
Overview 1 RT 1: 246011-254631 bp Neighborhood of RT #1 [246011, 254631] MarR ADA RVT-Retrons Feature: gene Location: 246011-246442 bp Ori: RGR47940.1 Feature: domain Description: MarR Location: 246056-246431 bp Feature: domain Description: MarR Location: 246056-24643 1 bp Feature: gene Location: 246801-247793 bp Ori: RGR47941.1 Feature: domain Description: ADA Location: 246816-247785 bp Feature: domain Description: ADA Location: 246816-247785 bp Feature: gene Location: 248382-249890 bp Ori: RGR47942.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 249018-249666 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 249018-249666 bp Feature: gene Location: 249887-251695 bp Feature: gene Location: 251695-254631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), ADA (cd01320), RVT-Retrons