myRT

myRT report for GCA_003459065.1_ASM345906v1

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Seq: QRUO01000021.1 Bacteroides caccae strain AF24-29LB AF24-29LB.Scaf21, whole genome shotgun sequence (86469 bp)
Overview 1 RT 1: 71940-75871 bp Neighborhood of RT #1 [71940, 75871] RVT-UG27 Feature: gene Location: 71940-72587 bp Feature: gene Location: 72601-73269 bp Feature: gene Location: 73262-74524 bp Ori: RGR67594.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 73454-74090 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 73454-74090 bp Feature: gene Location: 74845-75342 bp Feature: gene Location: 75392-75871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRUO01000009.1 Bacteroides caccae strain AF24-29LB AF24-29LB.Scaf9, whole genome shotgun sequence (219457 bp)
Overview 1 RT 1: 118588-121756 bp Neighborhood of RT #1 [118588, 121788] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 118588-118833 bp Feature: gene Location: 118817-119323 bp Feature: gene Location: 119391-120881 bp Ori: RGR71104.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 119784-120381 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 119784-12 0381 bp Feature: gene Location: 121128-121439 bp Ori: RGR71105.1 Feature: domain Description: HTH_XRE Location: 121242-121395 bp Feature: domain Description: HTH_XRE Location: 12 12 42 -12 1395 bp Feature: gene Location: 121444-121788 bp Ori: RGR71106.1 Feature: domain Description: Gp49 Location: 121498-121756 bp Feature: domain Description: Gp49 Location: 12 1498-12 1756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)

Seq: QRUO01000036.1 Bacteroides caccae strain AF24-29LB AF24-29LB.Scaf36, whole genome shotgun sequence (25165 bp)
Overview 1 RT 1: 7189-15453 bp Neighborhood of RT #1 [7189, 15467] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 7189-7503 bp Ori: RGR65531.1 Feature: domain Description: DUF3876 Location: 7243-7492 bp Feature: domain Description: DUF3 876 Location: 7243 -7492 bp Feature: gene Location: 7518-9212 bp Ori: RGR65549.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 7638-9204 bp Feature: domain Description: Bac_Flav_CT_G Location: 763 8-9204 bp Feature: gene Location: 9209-10918 bp Ori: RGR65532.1 Gene: ltrA Feature: domain Description: RVT_N Location: 9311-9554 bp Feature: domain Description: RVT_N Location: 93 11-9554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9599-10247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9599-10247 bp Feature: domain Description: GIIM Note: maturase Location: 10301-10532 bp Feature: domain Description: GIIM Note: maturase Location: 103 01-1053 2 bp Feature: gene Location: 11472-12392 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 11475-12393 bp Feature: domain Description: Bac_Flav_CT_G Location: 11475-123 93 bp Feature: gene Location: 12389-12724 bp Ori: RGR65533.1 Feature: domain Description: DUF4133 Location: 12416-12683 bp Feature: domain Description: DUF413 3 Location: 12416-12683 bp Feature: gene Location: 12736-12978 bp Ori: RGR65534.1 Feature: domain Description: DUF4134 Location: 12883-12973 bp Feature: domain Description: DUF413 4 Location: 12883 -12973 bp Feature: gene Location: 12975-14630 bp Ori: RGR65535.1 Gene: ltrA Feature: domain Description: RVT_N Location: 13032-13269 bp Feature: domain Description: RVT_N Location: 13 03 2-13 269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13320-13968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 20-13 968 bp Feature: domain Description: GIIM Note: maturase Location: 14025-14256 bp Feature: domain Description: GIIM Note: maturase Location: 14025-14256 bp Feature: gene Location: 14926-15225 bp Feature: gene Location: 15246-15467 bp Ori: RGR65537.1 Feature: domain Description: DUF4134 Location: 15276-15453 bp Feature: domain Description: DUF413 4 Location: 15276-15453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), DUF4134 (pfam13572)

Seq: QRUO01000060.1 Bacteroides caccae strain AF24-29LB AF24-29LB.Scaf60, whole genome shotgun sequence (2892 bp)
Overview 1 RT 1: 1-1762 bp Neighborhood of RT #1 [1, 2154] RVT_N RVT-GII GIIM Feature: gene Location: 1-485 bp Feature: gene Location: 487-2154 bp Ori: RGR64181.1 Gene: ltrA Feature: domain Description: RVT_N Location: 541-784 bp Feature: domain Description: RVT_N Location: 54 1-784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-14 77 bp Feature: domain Description: GIIM Note: maturase Location: 1531-1762 bp Feature: domain Description: GIIM Note: maturase Location: 1531-1762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRUO01000008.1 Bacteroides caccae strain AF24-29LB AF24-29LB.Scaf8, whole genome shotgun sequence (224028 bp)
Overview 1 RT 1: 102874-114221 bp Neighborhood of RT #1 [102874, 114259] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 102874-104040 bp Feature: gene Location: 104050-110838 bp Ori: RGR71754.1 Feature: domain Description: Laminin_G_3 Location: 106486-106867 bp Feature: domain Description: Laminin_G_3 Location: 106486-106867 bp Feature: domain Description: pfam08757 Location: 107662-107986 bp Feature: domain Description: pfam0875 7 Location: 107662-107986 bp Feature: domain Description: LRR_AMN1 Location: 108592-109063 bp Feature: domain Description: LRR_AMN1 Location: 1085 92-109063 bp Feature: gene Location: 111272-112567 bp Ori: RGR71850.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111488-112079 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111488-112079 bp Feature: gene Location: 112569-113063 bp Feature: gene Location: 113114-114259 bp Ori: RGR71756.1 Feature: domain Description: Arm-DNA-bind_5 Location: 113138-113384 bp Feature: domain Description: Arm-DNA-bind_5 Location: 113138-113384 bp Feature: domain Description: Phage_int_SAM_5 Location: 113423-113708 bp Feature: domain Description: Phage_int_SAM_5 Location: 113423-113708 bp Feature: domain Description: INTN1_C_like Location: 113747-114221 bp Feature: domain Description: INTN1_C_like Location: 113747-114221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QRUO01000014.1 Bacteroides caccae strain AF24-29LB AF24-29LB.Scaf14, whole genome shotgun sequence (147663 bp)
Overview 1 RT 1: 133657-147589 bp Neighborhood of RT #1 [133657, 147591] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons GlnA3 Feature: gene Location: 133657-135453 bp Ori: RGR69175.1 Feature: domain Description: rpsA Location: 133723-135337 bp Feature: domain Description: rpsA Location: 133723-135337 bp Feature: gene Location: 135550-141516 bp Ori: RGR69176.1 Feature: domain Description: DUF4011 Location: 136780-137293 bp Feature: domain Description: DUF4011 Location: 136 780-137293 bp Feature: domain Description: DEXXQc_SF1 Location: 137632-138247 bp Feature: domain Description: DEXXQc_SF1 Location: 1376 32-138247 bp Feature: domain Description: DEXXQc_SF1 Location: 138877-139819 bp Feature: domain Description: DEXXQc_SF1 Location: 138877-139819 bp Feature: domain Description: TIGR00376 Location: 139951-140341 bp Feature: domain Description: TIGR00376 Location: 139951-140341 bp Feature: domain Description: MTES_1575 Location: 140491-140776 bp Feature: domain Description: MTES_1575 Location: 140491-140776 bp Feature: domain Description: DUF3320 Location: 141025-141166 bp Feature: domain Description: DUF3320 Location: 141025-14116 6 bp Feature: gene Location: 141513-142643 bp Ori: RGR69177.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 141834-142386 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 141834-142386 bp Feature: gene Location: 142846-145008 bp Feature: gene Location: 145402-147591 bp Ori: RGR69178.1 Feature: domain Description: GlnA3 Location: 145474-147589 bp Feature: domain Description: GlnA3 Location: 145474-147589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, GlnA3 (COG3968)

Seq: QRUO01000002.1 Bacteroides caccae strain AF24-29LB AF24-29LB.Scaf2, whole genome shotgun sequence (425289 bp)
Overview 1 RT 1: 238206-241734 bp Neighborhood of RT #1 [238206, 241734] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 238206-239015 bp Ori: RGR73794.1 Feature: domain Description: DUF1566 Location: 238737-238986 bp Feature: domain Description: DUF1566 Location: 2387 37 -238986 bp Feature: gene Location: 239162-239569 bp Ori: RGR73795.1 Feature: domain Description: Avd_like Location: 239195-239504 bp Feature: domain Description: Avd_like Location: 239195-239504 bp Feature: gene Location: 239584-241005 bp Ori: RGR73796.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 239959-240661 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 239959-240661 bp Feature: gene Location: 240968-241246 bp Feature: gene Location: 241450-241734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: QRUO01000004.1 Bacteroides caccae strain AF24-29LB AF24-29LB.Scaf4, whole genome shotgun sequence (296144 bp)
Overview 1 RT 1: 284119-292558 bp Neighborhood of RT #1 [284119, 292920] DUF418 RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 284119-284427 bp Ori: RGR73008.1 Feature: domain Description: DUF418 Location: 284179-284425 bp Feature: domain Description: DUF418 Location: 28 4179-28 4425 bp Feature: gene Location: 284614-285894 bp Feature: gene Location: 285896-287563 bp Ori: RGR73010.1 Gene: ltrA Feature: domain Description: RVT_N Location: 285950-286193 bp Feature: domain Description: RVT_N Location: 28 5950-28 6193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286238-286886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 6238 -28 68 8 6 bp Feature: domain Description: GIIM Note: maturase Location: 286940-287171 bp Feature: domain Description: GIIM Note: maturase Location: 28 6940-28 7171 bp Feature: gene Location: 287803-287985 bp Feature: gene Location: 288244-292920 bp Feature: domain Description: N6_Mtase Location: 288553-289159 bp Feature: domain Description: N6_Mtase Location: 28 8 553-28 9159 bp Feature: domain Description: COG4646 Location: 290536-292558 bp Feature: domain Description: COG4646 Location: 290536-292558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF418 (pfam04235), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )