myRT

myRT report for GCA_003459105.1_ASM345910v1

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Seq: QRUQ01000023.1 Bacteroides ovatus strain AF24-28LB AF24-28LB.Scaf23, whole genome shotgun sequence (110999 bp)
Overview 1 RT 1: 57356-62880 bp Neighborhood of RT #1 [57356, 62891] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 57356-57691 bp Ori: RGR80262.1 Feature: domain Description: DUF4133 Location: 57383-57650 bp Feature: domain Description: DUF41 33 Location: 57383-57650 bp Feature: gene Location: 57688-58608 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 57691-58609 bp Feature: domain Description: Bac_Flav_CT_G Location: 57691 -58609 bp Feature: gene Location: 59162-60871 bp Ori: RGR80263.1 Gene: ltrA Feature: domain Description: RVT_N Location: 59264-59507 bp Feature: domain Description: RVT_N Location: 59264-59507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59552-60200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59552-60200 bp Feature: domain Description: GIIM Note: maturase Location: 60254-60485 bp Feature: domain Description: GIIM Note: maturase Location: 60254-60485 bp Feature: gene Location: 60868-62562 bp Ori: RGR80317.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 60988-62554 bp Feature: domain Description: Bac_Flav_CT_G Location: 60988-62554 bp Feature: gene Location: 62577-62891 bp Ori: RGR80264.1 Feature: domain Description: DUF3876 Location: 62631-62880 bp Feature: domain Description: DUF3876 Location: 62631 -62880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QRUQ01000021.1 Bacteroides ovatus strain AF24-28LB AF24-28LB.Scaf21, whole genome shotgun sequence (122808 bp)
Overview 1 RT 1: 26090-31066 bp Neighborhood of RT #1 [26090, 31080] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 26090-26260 bp Ori: RGR81391.1 Feature: domain Description: DUF3875 Location: 26099-26255 bp Feature: domain Description: DUF3875 Location: 2 6099-2 62 55 bp Feature: gene Location: 26279-28111 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 26282-28112 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 62 82 -2 8112 bp Feature: gene Location: 28733-30544 bp Ori: RGR81392.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28997-29819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8997-2 9819 bp Feature: domain Description: Intron_maturas2 Location: 29894-30209 bp Feature: domain Description: Intron_maturas2 Location: 2 9894-302 09 bp Feature: domain Description: HNHc Note: nucleases Location: 30365-30515 bp Feature: domain Description: HNHc Note: nucleases Location: 30365-30515 bp Feature: gene Location: 30622-30900 bp Ori: RGR81393.1 Feature: domain Description: Bac_Flav_CT_G Location: 30640-30898 bp Feature: domain Description: Bac_Flav_CT_G Location: 30640-30898 bp Feature: gene Location: 30907-31080 bp Ori: RGR81394.1 Feature: domain Description: Bac_Flav_CT_G Location: 30910-31066 bp Feature: domain Description: Bac_Flav_CT_G Location: 30910-31066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRUQ01000048.1 Bacteroides ovatus strain AF24-28LB AF24-28LB.Scaf48, whole genome shotgun sequence (29142 bp)
Overview 1 RT 1: 175-12451 bp Neighborhood of RT #1 [175, 12567] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 175-999 bp Ori: RGR77266.1 Feature: domain Description: PDDEXK_2 Location: 196-874 bp Feature: domain Description: PDDEXK_2 Location: 196-874 bp Feature: gene Location: 1211-3373 bp Feature: gene Location: 3579-4709 bp Ori: RGR77267.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3900-4443 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 900-4443 bp Feature: gene Location: 4711-10668 bp Ori: RGR77268.1 Feature: domain Description: DUF4011 Location: 5941-6454 bp Feature: domain Description: DUF4011 Location: 5941-6454 bp Feature: domain Description: DEXXQc_SF1 Location: 6793-7759 bp Feature: domain Description: DEXXQc_SF1 Location: 6793 -7759 bp Feature: domain Description: DEXXQc_SF1 Location: 8221-8980 bp Feature: domain Description: DEXXQc_SF1 Location: 8221-8980 bp Feature: domain Description: TIGR00376 Location: 9112-9499 bp Feature: domain Description: TIGR003 76 Location: 9112-9499 bp Feature: domain Description: MTES_1575 Location: 9652-9937 bp Feature: domain Description: MTES_1575 Location: 9652-993 7 bp Feature: domain Description: DUF3320 Location: 10177-10318 bp Feature: domain Description: DUF3 3 20 Location: 10177-103 18 bp Feature: gene Location: 10765-12567 bp Ori: RGR77269.1 Feature: domain Description: rpsA Location: 10834-12451 bp Feature: domain Description: rpsA Location: 1083 4-12451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QRUQ01000014.1 Bacteroides ovatus strain AF24-28LB AF24-28LB.Scaf14, whole genome shotgun sequence (168163 bp)
Overview 1 RT 1: 24585-28824 bp Neighborhood of RT #1 [24585, 28859] Mfa_like_1 DUF1566 HTH_28 RVT-GII RVT_N RVT-GII GDPD_like_2 Feature: gene Location: 24585-25865 bp Ori: RGR82637.1 Feature: domain Description: Mfa_like_1 Location: 24657-25068 bp Feature: domain Description: Mfa_like_1 Location: 24 657-25068 bp Feature: domain Description: DUF1566 Location: 25554-25854 bp Feature: domain Description: DUF1566 Location: 25554 -25854 bp Feature: gene Location: 26202-26492 bp Ori: RGR82638.1 Feature: domain Description: HTH_28 Location: 26226-26370 bp Feature: domain Description: HTH_28 Location: 26226-26370 bp Feature: gene Location: 26613-26810 bp Ori: RGR82639.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26616-26808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26616-26808 bp Feature: gene Location: 26788-27165 bp Ori: RGR82640.1 Feature: domain Description: RVT_N Location: 26791-27016 bp Feature: domain Description: RVT_N Location: 26791-27016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27070-27139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27070-27139 bp Feature: gene Location: 27179-27415 bp Feature: gene Location: 28110-28859 bp Ori: RGR82642.1 Feature: domain Description: GDPD_like_2 Location: 28167-28824 bp Feature: domain Description: GDPD_like_2 Location: 28167-28824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfa_like_1 (pfam13149), DUF1566 (pfam07603), HTH_28 (pfam13518), RVT-GII, RVT_N (pfam13655), GDPD_like_2 (cd08582)

Seq: QRUQ01000057.1 Bacteroides ovatus strain AF24-28LB AF24-28LB.Scaf57, whole genome shotgun sequence (18315 bp)
Overview 1 RT 1: 429-5258 bp Neighborhood of RT #1 [429, 5258] RVT-UG27 HTH_Hin_like Feature: gene Location: 429-1418 bp Feature: gene Location: 1453-1911 bp Feature: gene Location: 3069-4337 bp Ori: RGR76137.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 3258-3894 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 325 8-3894 bp Feature: gene Location: 4334-4657 bp Ori: RGR76138.1 Feature: domain Description: HTH_Hin_like Location: 4385-4487 bp Feature: domain Description: HTH_Hin_like Location: 4385 -4487 bp Feature: gene Location: 4647-5258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, HTH_Hin_like (cd00569)

Seq: QRUQ01000059.1 Bacteroides ovatus strain AF24-28LB AF24-28LB.Scaf59, whole genome shotgun sequence (15301 bp)
Overview 1 RT 1: 1-8980 bp Neighborhood of RT #1 [1, 8991] DUF1566 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 1-590 bp Feature: gene Location: 653-1006 bp Feature: gene Location: 997-2418 bp Ori: RGR76045.1 Feature: domain Description: DUF1566 Location: 1069-1213 bp Feature: domain Description: DUF156 6 Location: 106 9-1213 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1402-2143 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1402-2143 bp Feature: gene Location: 2431-2832 bp Ori: RGR76046.1 Feature: domain Description: Avd_like Location: 2470-2809 bp Feature: domain Description: Avd_like Location: 2470-2809 bp Feature: gene Location: 2962-8991 bp Ori: RGR76047.1 Feature: domain Description: DUF1566 Location: 8677-8980 bp Feature: domain Description: DUF156 6 Location: 86 77-8980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)

Seq: QRUQ01000001.1 Bacteroides ovatus strain AF24-28LB AF24-28LB.Scaf1, whole genome shotgun sequence (463906 bp)
Overview 1 RT 1: 31410-37345 bp Neighborhood of RT #1 [31410, 37815] Toprim_2 RVT-GII Intron_maturas2 AAA_25 Feature: gene Location: 31410-32813 bp Feature: gene Location: 33096-34007 bp Ori: RGR86796.1 Feature: domain Description: Toprim_2 Location: 33630-33918 bp Feature: domain Description: Toprim_2 Location: 33630-33918 bp Feature: gene Location: 33997-35805 bp Ori: RGR86797.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34261-35083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34261-35083 bp Feature: domain Description: Intron_maturas2 Location: 35152-35461 bp Feature: domain Description: Intron_maturas2 Location: 35152-35461 bp Feature: gene Location: 36369-36536 bp Feature: gene Location: 36748-37815 bp Ori: RGR86798.1 Feature: domain Description: AAA_25 Location: 36883-37345 bp Feature: domain Description: AAA_25 Location: 36883-37 345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), AAA_25 (pfam13481)