myRT

myRT report for GCA_003459155.1_ASM345915v1

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Seq: QRUT01000002.1 Bacteroides plebeius strain AF24-20AC AF24-20AC.Scaf2, whole genome shotgun sequence (189243 bp)
Overview 1 RT 1: 184426-189243 bp Neighborhood of RT #1 [184426, 189243] HTH_17 COG3943 RVT-GII Intron_maturas2 HNHc Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 184426-184731 bp Feature: domain Description: HTH_17 Location: 184564-184693 bp Feature: domain Description: HTH_1 7 Location: 1 84564-1 84693 bp Feature: gene Location: 184809-185171 bp Feature: domain Description: COG3943 Location: 184848-185097 bp Feature: domain Description: COG3943 Location: 1 84848-1 85097 bp Feature: gene Location: 185385-187193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185649-186471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 85649-1 86471 bp Feature: domain Description: Intron_maturas2 Location: 186597-186849 bp Feature: domain Description: Intron_maturas2 Location: 1 86597-1 86849 bp Feature: domain Description: HNHc Note: nucleases Location: 187026-187167 bp Feature: domain Description: HNHc Note: nucleases Location: 1 87026-1 871 67 bp Feature: gene Location: 187744-188913 bp Feature: domain Description: Arm-DNA-bind_5 Location: 187774-188029 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 87774-1 88029 bp Feature: domain Description: Phage_int_SAM_5 Location: 188068-188389 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 88068-1 88389 bp Feature: domain Description: INTN1_C_like Location: 188428-188896 bp Feature: domain Description: INTN1 _C_like Location: 1 88428-1 88896 bp Feature: gene Location: 189029-189243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QRUT01000019.1 Bacteroides plebeius strain AF24-20AC AF24-20AC.Scaf19, whole genome shotgun sequence (73112 bp)
Overview 1 RT 1: 24954-28121 bp Neighborhood of RT #1 [24954, 28153] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 24954-25199 bp Feature: gene Location: 25183-25689 bp Feature: gene Location: 25757-27246 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26150-26747 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 6150-2 6747 bp Feature: gene Location: 27493-27804 bp Feature: domain Description: HTH_XRE Location: 27607-27760 bp Feature: domain Description: HTH_XRE Location: 2 7607-2 7760 bp Feature: gene Location: 27809-28153 bp Feature: domain Description: Gp49 Location: 27863-28121 bp Feature: domain Description: Gp49 Location: 2 7863-2 812 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)

Seq: QRUT01000012.1 Bacteroides plebeius strain AF24-20AC AF24-20AC.Scaf12, whole genome shotgun sequence (89862 bp)
Overview 1 RT 1: 64944-70650 bp Neighborhood of RT #1 [64944, 70694] DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 64944-65324 bp Feature: domain Description: DUF3876 Location: 65025-65289 bp Feature: domain Description: DUF3 876 Location: 65025-65289 bp Feature: gene Location: 65493-65591 bp Feature: gene Location: 65595-67418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65859-66681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65859-66681 bp Feature: domain Description: Intron_maturas2 Location: 66855-67056 bp Feature: domain Description: Intron_maturas2 Location: 66855-67056 bp Feature: domain Description: HNHc Note: nucleases Location: 67209-67380 bp Feature: domain Description: HNHc Note: nucleases Location: 67209-673 80 bp Feature: gene Location: 67966-70365 bp Feature: domain Description: Bac_Flav_CT_G Location: 67969-70357 bp Feature: domain Description: Bac_Flav_CT_G Location: 67969-703 57 bp Feature: gene Location: 70362-70694 bp Feature: domain Description: DUF4133 Location: 70380-70650 bp Feature: domain Description: DUF413 3 Location: 703 80-70650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571)

Seq: QRUT01000054.1 Bacteroides plebeius strain AF24-20AC AF24-20AC.Scaf54, whole genome shotgun sequence (27758 bp)
Overview 1 RT 1: 12605-18540 bp Neighborhood of RT #1 [12605, 19010] Toprim_2 RVT-GII Intron_maturas2 AAA_25 Feature: gene Location: 12605-14008 bp Feature: gene Location: 14291-15202 bp Feature: domain Description: Toprim_2 Location: 14825-15113 bp Feature: domain Description: Toprim_2 Location: 14 825-15113 bp Feature: gene Location: 15192-17000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15456-16278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154 56-16278 bp Feature: domain Description: Intron_maturas2 Location: 16347-16656 bp Feature: domain Description: Intron_maturas2 Location: 1634 7-16656 bp Feature: gene Location: 17564-17731 bp Feature: gene Location: 17943-19010 bp Feature: domain Description: AAA_25 Location: 18078-18540 bp Feature: domain Description: AAA_25 Location: 18078-1854 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), AAA_25 (pfam13481)