myRT

myRT report for GCA_003459305.1_ASM345930v1

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Seq: QRVN01000015.1 Prevotella copri strain AF22-1 AF22-1.Scaf15, whole genome shotgun sequence (81734 bp)
Overview 1 RT 1: 40917-45382 bp Neighborhood of RT #1 [40917, 45382] RVT-DGRs Feature: gene Location: 40917-41387 bp Feature: gene Location: 41399-42823 bp Feature: gene Location: 43423-44133 bp Ori: RGS46944.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43588-44095 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43588-44095 bp Feature: gene Location: 44183-44992 bp Feature: gene Location: 44993-45382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRVN01000071.1 Prevotella copri strain AF22-1 AF22-1.Scaf71, whole genome shotgun sequence (2610 bp)
Overview 1 RT 1: 1-2461 bp Neighborhood of RT #1 [1, 2469] RVT-GII Intron_maturas2 Feature: gene Location: 1-515 bp Feature: gene Location: 1087-2469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351-2173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351-2 173 bp Feature: domain Description: Intron_maturas2 Location: 2332-2461 bp Feature: domain Description: Intron_maturas2 Location: 2 332 -2 461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRVN01000047.1 Prevotella copri strain AF22-1 AF22-1.Scaf47, whole genome shotgun sequence (18106 bp)
Overview 1 RT 1: 10504-15795 bp Neighborhood of RT #1 [10504, 15815] DDE_Tnp_1_4 FldA NapF RVT-GII GIIM LysR YeiH Feature: gene Location: 10504-10794 bp Feature: domain Description: DDE_Tnp_1_4 Location: 10513-10774 bp Feature: domain Description: DDE_Tnp_1_4 Location: 10513 -10774 bp Feature: gene Location: 10904-11698 bp Ori: RGS44947.1 Feature: domain Description: FldA Location: 10913-11195 bp Feature: domain Description: FldA Location: 10913 -11195 bp Feature: domain Description: NapF Location: 11417-11639 bp Feature: domain Description: NapF Location: 11417-1163 9 bp Feature: gene Location: 12359-13621 bp Ori: RGS44948.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12566-13220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12566-13 220 bp Feature: domain Description: GIIM Note: maturase Location: 13301-13529 bp Feature: domain Description: GIIM Note: maturase Location: 13 3 01-13 529 bp Feature: gene Location: 13790-14683 bp Ori: RGS44949.1 Feature: domain Description: LysR Location: 13805-14645 bp Feature: domain Description: LysR Location: 13 805-14645 bp Feature: gene Location: 14769-15815 bp Ori: RGS44950.1 Feature: domain Description: YeiH Location: 14787-15795 bp Feature: domain Description: YeiH Location: 14787-15795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), FldA (COG0716), NapF (COG1145), RVT-GII, GIIM (pfam08388), LysR (COG0583), YeiH (COG2855)

Seq: QRVN01000030.1 Prevotella copri strain AF22-1 AF22-1.Scaf30, whole genome shotgun sequence (49093 bp)
Overview 1 RT 1: 29643-40272 bp Neighborhood of RT #1 [29643, 40272] DEXXQc_Upf1-like DEXXQc_Upf1-like KOG1805 PIN_VapC_PhoHL-ATPase RpsA S1 HATPase_c_3 RVT-AbiP2 NGN_SP_UpxY KOW_Spt5_2 Feature: gene Location: 29643-31832 bp Ori: RGS45728.1 Feature: domain Description: DEXXQc_Upf1-like Location: 30249-30378 bp Feature: domain Description: DEXXQc_Upf1-like Location: 3024 9-30378 bp Feature: domain Description: DEXXQc_Upf1-like Location: 30534-30693 bp Feature: domain Description: DEXXQc_Upf1-like Location: 30534 -30693 bp Feature: domain Description: KOG1805 Location: 30969-31275 bp Feature: domain Description: KOG1805 Location: 30969-31275 bp Feature: domain Description: PIN_VapC_PhoHL-ATPase Location: 31446-31815 bp Feature: domain Description: PIN_VapC_PhoHL-ATPase Location: 314 4 6-31815 bp Feature: gene Location: 31845-37022 bp Ori: RGS45729.1 Feature: domain Description: RpsA Location: 31851-32046 bp Feature: domain Description: RpsA Location: 31851-3204 6 bp Feature: domain Description: S1 Location: 32160-32337 bp Feature: domain Description: S1 Location: 32160-32337 bp Feature: domain Description: HATPase_c_3 Location: 32829-33069 bp Feature: domain Description: HATPase_c_3 Location: 32829-33069 bp Feature: gene Location: 37033-38654 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 37471-37780 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 374 71-37780 bp Feature: gene Location: 38670-39356 bp Ori: RGS45730.1 Feature: domain Description: NGN_SP_UpxY Location: 38799-39129 bp Feature: domain Description: NGN_SP_UpxY Location: 38799-39129 bp Feature: domain Description: KOW_Spt5_2 Location: 39189-39288 bp Feature: domain Description: KOW_Spt5_2 Location: 39189-39288 bp Feature: gene Location: 39718-40272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXXQc_Upf1-like (cd17934), KOG1805 (KOG1805, DNA replication helicase ), PIN_VapC_PhoHL-ATPase (cd09883), RpsA (COG0539), S1 (smart00316), HATPase_c_3 (pfam13589), RVT-AbiP2, NGN_SP_UpxY (cd09895), KOW_Spt5_2 (cd06082)