myRT

myRT report for GCA_003459425.1_ASM345942v1

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Seq: QRVZ01000001.1 Bacteroides ovatus strain AF20-9LB AF20-9LB.Scaf1, whole genome shotgun sequence (724573 bp)
Overview 1 RT 1: 311554-321931 bp Neighborhood of RT #1 [311554, 321931] RVT-DGRs Feature: gene Location: 311554-319371 bp Feature: gene Location: 319449-319673 bp Feature: gene Location: 319795-321216 bp Ori: RGS88167.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 320011-320605 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32001 1 -320605 bp Feature: gene Location: 321213-321701 bp Feature: gene Location: 321698-321931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRVZ01000007.1 Bacteroides ovatus strain AF20-9LB AF20-9LB.Scaf7, whole genome shotgun sequence (279127 bp)
Overview 1 RT 1: 122133-125665 bp Neighborhood of RT #1 [122133, 125665] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 122133-122942 bp Ori: RGS84091.1 Feature: domain Description: DUF1566 Location: 122664-122913 bp Feature: domain Description: DUF1566 Location: 12 2 664-12 2 913 bp Feature: gene Location: 123090-123497 bp Ori: RGS84092.1 Feature: domain Description: Avd_like Location: 123123-123432 bp Feature: domain Description: Avd_like Location: 12 312 3-12 3432 bp Feature: gene Location: 123512-124933 bp Ori: RGS84093.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 123887-124589 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12 3887-12 4589 bp Feature: gene Location: 124896-125174 bp Feature: gene Location: 125378-125665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: QRVZ01000018.1 Bacteroides ovatus strain AF20-9LB AF20-9LB.Scaf18, whole genome shotgun sequence (119974 bp)
Overview 1 RT 1: 89601-93534 bp Neighborhood of RT #1 [89601, 93534] RVT-UG27 Feature: gene Location: 89601-90248 bp Feature: gene Location: 90262-90930 bp Feature: gene Location: 90923-92185 bp Ori: RGS81258.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 91115-91751 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 91115-91751 bp Feature: gene Location: 92508-93005 bp Feature: gene Location: 93055-93534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRVZ01000047.1 Bacteroides ovatus strain AF20-9LB AF20-9LB.Scaf47, whole genome shotgun sequence (20708 bp)
Overview 1 RT 1: 14634-19398 bp Neighborhood of RT #1 [14634, 19398] IHF_B RVT_N RVT-GII GIIM DUF772 DDE_Tnp_1_2 Feature: gene Location: 14634-14861 bp Feature: gene Location: 14961-15245 bp Ori: RGS77960.1 Feature: domain Description: IHF_B Location: 14964-15216 bp Feature: domain Description: IHF_B Location: 14 964 -15216 bp Feature: gene Location: 16011-17501 bp Ori: RGS77961.1 Gene: ltrA Feature: domain Description: RVT_N Location: 16080-16320 bp Feature: domain Description: RVT_N Location: 16080-16320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16368-17013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16368-17013 bp Feature: domain Description: GIIM Note: maturase Location: 17067-17301 bp Feature: domain Description: GIIM Note: maturase Location: 17067-17301 bp Feature: gene Location: 17701-19059 bp Ori: RGS77962.1 Feature: domain Description: DUF772 Location: 17881-18073 bp Feature: domain Description: DUF772 Location: 17881-18073 bp Feature: domain Description: DDE_Tnp_1_2 Location: 18745-18958 bp Feature: domain Description: DDE_Tnp_1_2 Location: 1874 5-18958 bp Feature: gene Location: 19165-19398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IHF_B (cd13836), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), DDE_Tnp_1_2 (pfam13586)

Seq: QRVZ01000012.1 Bacteroides ovatus strain AF20-9LB AF20-9LB.Scaf12, whole genome shotgun sequence (215497 bp)
Overview 1 RT 1: 85368-96712 bp Neighborhood of RT #1 [85368, 96750] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 85368-86534 bp Feature: gene Location: 86544-93332 bp Ori: RGS82457.1 Feature: domain Description: Laminin_G_3 Location: 88980-89361 bp Feature: domain Description: Laminin_G_3 Location: 88980-89361 bp Feature: domain Description: pfam08757 Location: 90156-90480 bp Feature: domain Description: pfam0875 7 Location: 9015 6-90480 bp Feature: domain Description: LRR_AMN1 Location: 91086-91557 bp Feature: domain Description: LRR_AMN1 Location: 91086-915 5 7 bp Feature: gene Location: 93764-95059 bp Ori: RGS82562.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93980-94571 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93980-945 71 bp Feature: gene Location: 95061-95555 bp Feature: gene Location: 95605-96750 bp Ori: RGS82459.1 Feature: domain Description: Arm-DNA-bind_5 Location: 95629-95875 bp Feature: domain Description: Arm-DNA-bind_5 Location: 95 629-95 875 bp Feature: domain Description: Phage_int_SAM_5 Location: 95914-96199 bp Feature: domain Description: Phage_int_SAM_5 Location: 95 914-96199 bp Feature: domain Description: INTN1_C_like Location: 96238-96712 bp Feature: domain Description: INTN1_C_like Location: 96238-96712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QRVZ01000037.1 Bacteroides ovatus strain AF20-9LB AF20-9LB.Scaf37, whole genome shotgun sequence (39935 bp)
Overview 1 RT 1: 2107-6355 bp Neighborhood of RT #1 [2107, 6390] cNMP_binding YhcG_C RVT_N RVT-GII GIIM YhcG_C Sig70_bacteroi1 Feature: gene Location: 2107-2670 bp Ori: RGS79092.1 Feature: domain Description: cNMP_binding Location: 2194-2452 bp Feature: domain Description: cNMP_binding Location: 2194-2452 bp Feature: gene Location: 2828-3112 bp Feature: domain Description: YhcG_C Location: 2831-3089 bp Feature: domain Description: YhcG_C Location: 2831-3089 bp Feature: gene Location: 3189-4805 bp Ori: RGS79093.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3222-3459 bp Feature: domain Description: RVT_N Location: 3222-3459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3510-4212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3510-4212 bp Feature: domain Description: GIIM Note: maturase Location: 4287-4518 bp Feature: domain Description: GIIM Note: maturase Location: 4287-4518 bp Feature: gene Location: 5373-5495 bp Feature: domain Description: YhcG_C Location: 5376-5496 bp Feature: domain Description: YhcG_C Location: 5376 -5496 bp Feature: gene Location: 5842-6390 bp Ori: RGS79094.1 Feature: domain Description: Sig70_bacteroi1 Location: 5860-6355 bp Feature: domain Description: Sig70_bacteroi1 Location: 586 0-6 355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), YhcG_C, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Sig70_bacteroi1 (TIGR02985)

Seq: QRVZ01000015.1 Bacteroides ovatus strain AF20-9LB AF20-9LB.Scaf15, whole genome shotgun sequence (140171 bp)
Overview 1 RT 1: 64366-76634 bp Neighborhood of RT #1 [64366, 76759] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 64366-66168 bp Ori: RGS81774.1 Feature: domain Description: rpsA Location: 64435-66052 bp Feature: domain Description: rpsA Location: 64435-66052 bp Feature: gene Location: 66266-72223 bp Ori: RGS81775.1 Feature: domain Description: DUF4011 Location: 67496-68009 bp Feature: domain Description: DUF4011 Location: 67 496-68009 bp Feature: domain Description: DEXXQc_SF1 Location: 68348-68966 bp Feature: domain Description: DEXXQc_SF1 Location: 68348-68966 bp Feature: domain Description: DEXXQc_SF1 Location: 69776-70535 bp Feature: domain Description: DEXXQc_SF1 Location: 697 7 6-7 0535 bp Feature: domain Description: TIGR00376 Location: 70664-71054 bp Feature: domain Description: TIGR0037 6 Location: 7 0664-7 1054 bp Feature: domain Description: MTES_1575 Location: 71207-71492 bp Feature: domain Description: MTES_157 5 Location: 7 1207 -7 1492 bp Feature: domain Description: DUF3320 Location: 71732-71873 bp Feature: domain Description: DUF3320 Location: 7 17 32-7 187 3 bp Feature: gene Location: 72225-73355 bp Ori: RGS81776.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72546-73089 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7 2546-7 3089 bp Feature: gene Location: 73561-75723 bp Feature: gene Location: 75935-76759 bp Ori: RGS81777.1 Feature: domain Description: PDDEXK_2 Location: 75956-76634 bp Feature: domain Description: PDDEXK_2 Location: 7 5956-7 6634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)