myRT

myRT report for GCA_003459465.1_ASM345946v1

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Seq: QRVJ01000003.1 Bacteroides cellulosilyticus strain AF22-3AC AF22-3AC.Scaf3, whole genome shotgun sequence (371537 bp)
Overview 1 RT 1: 271843-278069 bp Neighborhood of RT #1 [271843, 278320] DUF4373 PDDEXK_2 PDDEXK_2 RVT_N RVT-GII GIIM ComA-like_MBL-fold Feature: gene Location: 271843-272715 bp Feature: domain Description: DUF4373 Location: 271861-272113 bp Feature: domain Description: DUF4373 Location: 271 861 -2721 1 3 bp Feature: gene Location: 273025-273846 bp Feature: domain Description: PDDEXK_2 Location: 273037-273358 bp Feature: domain Description: PDDEXK_2 Location: 273037-273358 bp Feature: domain Description: PDDEXK_2 Location: 273514-273697 bp Feature: domain Description: PDDEXK_2 Location: 27351 4-273697 bp Feature: gene Location: 273986-275620 bp Feature: RT Description: RVT_N Location: 274040-274283 bp Feature: RT Description: RVT_N Location: 274040-274283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274328-274973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274328-274973 bp Feature: domain Description: GIIM Note: maturase Location: 275024-275258 bp Feature: domain Description: GIIM Note: maturase Location: 275024-275258 bp Feature: gene Location: 276389-277156 bp Feature: gene Location: 277355-278320 bp Feature: domain Description: ComA-like_MBL-fold Location: 277466-278069 bp Feature: domain Description: ComA-like_MBL-fold Location: 277466-278069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4373 (pfam14297), PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ComA-like_MBL-fold (cd07731)

Seq: QRVJ01000011.1 Bacteroides cellulosilyticus strain AF22-3AC AF22-3AC.Scaf11, whole genome shotgun sequence (218006 bp)
Overview 1 RT 1: 152609-161249 bp Neighborhood of RT #1 [152609, 161249] Alginate_lyase Hepar_II_III LacZ RVT-GII GIIM DUF4890 Feature: gene Location: 152609-154519 bp Feature: domain Description: Alginate_lyase Location: 153002-153521 bp Feature: domain Description: Alginate_lyase Location: 153002 -15352 1 bp Feature: domain Description: Hepar_II_III Location: 153773-154154 bp Feature: domain Description: Hepar_II_III Location: 153773-154154 bp Feature: gene Location: 154529-157315 bp Feature: domain Description: LacZ Location: 154607-155873 bp Feature: domain Description: LacZ Location: 154607-155873 bp Feature: gene Location: 157422-158663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157587-158202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157587-1582 02 bp Feature: domain Description: GIIM Note: maturase Location: 158256-158487 bp Feature: domain Description: GIIM Note: maturase Location: 1582 56-158487 bp Feature: gene Location: 159328-159864 bp Feature: domain Description: DUF4890 Location: 159430-159796 bp Feature: domain Description: DUF4890 Location: 159430-159796 bp Feature: gene Location: 160347-161249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alginate_lyase (pfam05426), Hepar_II_III (pfam07940), LacZ (COG3250), RVT-GII, GIIM (pfam08388), DUF4890 (pfam16231)

Seq: QRVJ01000019.1 Bacteroides cellulosilyticus strain AF22-3AC AF22-3AC.Scaf19, whole genome shotgun sequence (101636 bp)
Overview 1 RT 1: 55487-58860 bp Neighborhood of RT #1 [55487, 58952] COG3943 RVT-Retrons HTH_17 Feature: gene Location: 55487-55852 bp Feature: domain Description: COG3943 Location: 55529-55784 bp Feature: domain Description: COG3 943 Location: 55529-55784 bp Feature: gene Location: 56117-56992 bp Feature: gene Location: 57023-57880 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57185-57710 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57185-57710 bp Feature: gene Location: 57905-58126 bp Feature: gene Location: 58587-58952 bp Feature: domain Description: HTH_17 Location: 58722-58860 bp Feature: domain Description: HTH_17 Location: 58722-58860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, HTH_17 (pfam12728)

Seq: QRVJ01000061.1 Bacteroides cellulosilyticus strain AF22-3AC AF22-3AC.Scaf61, whole genome shotgun sequence (2499 bp)
Overview 1 RT 1: 684-2499 bp Neighborhood of RT #1 [684, 2499] RVT_N RVT-GII YkfC Feature: gene Location: 684-2369 bp Feature: RT Description: RVT_N Location: 756-999 bp Feature: RT Description: RVT_N Location: 756-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-1692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 4 -1692 bp Feature: domain Description: YkfC Location: 1902-1992 bp Feature: domain Description: YkfC Location: 1902-1992 bp Feature: gene Location: 2353-2499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: QRVJ01000001.1 Bacteroides cellulosilyticus strain AF22-3AC AF22-3AC.Scaf1, whole genome shotgun sequence (855979 bp)
Overview 1 RT 1: 820263-825439 bp Neighborhood of RT #1 [820263, 825444] HptA MFS_DtpA_like RVT-Retrons secD COG1237 Feature: gene Location: 820263-820799 bp Feature: domain Description: HptA Location: 820281-820791 bp Feature: domain Description: HptA Location: 820281-820791 bp Feature: gene Location: 820839-822377 bp Feature: domain Description: MFS_DtpA_like Location: 820860-822348 bp Feature: domain Description: MFS_DtpA_like Location: 820860-822348 bp Feature: gene Location: 822649-823770 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 822961-823513 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 822961-8235 13 bp Feature: gene Location: 823767-824618 bp Feature: domain Description: secD Location: 823923-824172 bp Feature: domain Description: secD Location: 823923-824172 bp Feature: gene Location: 824638-825444 bp Feature: domain Description: COG1237 Location: 824641-825439 bp Feature: domain Description: COG1237 Location: 824641-825 439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HptA (COG0634), MFS_DtpA_like (cd17346), RVT-Retrons, secD (TIGR01129), COG1237 (Metal-dependent hydrolase, beta-lactamase superfamily II )