myRT

myRT report for GCA_003459565.1_ASM345956v1

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Seq: QRWH01000010.1 Dorea formicigenerans strain AF19-4AC AF19-4AC.Scaf10, whole genome shotgun sequence (98044 bp)
Overview 1 RT 1: 86-3811 bp Neighborhood of RT #1 [86, 3834] RVT-GII GIIM rSAM_mob_pairB rSAM_mob_pairA Feature: gene Location: 86-1405 bp Ori: RGT08000.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332-947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332-947 bp Feature: domain Description: GIIM Note: maturase Location: 1007-1223 bp Feature: domain Description: GIIM Note: maturase Location: 1 007-1 223 bp Feature: gene Location: 2249-3157 bp Ori: RGT08001.1 Feature: domain Description: rSAM_mob_pairB Location: 2279-3131 bp Feature: domain Description: rSAM_mob_pairB Location: 2279-31 31 bp Feature: gene Location: 3145-3834 bp Ori: RGT08002.1 Feature: domain Description: rSAM_mob_pairA Location: 3154-3811 bp Feature: domain Description: rSAM_mob_pairA Location: 31 54-381 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), rSAM_mob_pairB (TIGR04470), rSAM_mob_pairA (TIGR04471)

Seq: QRWH01000013.1 Dorea formicigenerans strain AF19-4AC AF19-4AC.Scaf13, whole genome shotgun sequence (84412 bp)
Overview 1 RT 1: 112-10985 bp Neighborhood of RT #1 [112, 11309] IscR HDGYP RVT-GII HTH_30 SpaA CollagenBindB SpaA IscR RpfG Feature: gene Location: 112-1572 bp Ori: RGT07511.1 Feature: domain Description: IscR Location: 115-517 bp Feature: domain Description: IscR Location: 115-517 bp Feature: domain Description: HDGYP Location: 817-1561 bp Feature: domain Description: HDGYP Location: 817-1561 bp Feature: gene Location: 1704-2018 bp Feature: gene Location: 2370-3095 bp Ori: RGT07513.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2616-2841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 616-2 841 bp Feature: domain Description: HTH_30 Location: 2898-3054 bp Feature: domain Description: HTH_30 Location: 2 898-3054 bp Feature: gene Location: 3716-9847 bp Ori: RGT07514.1 Feature: domain Description: SpaA Location: 8177-8372 bp Feature: domain Description: SpaA Location: 8177-8372 bp Feature: domain Description: CollagenBindB Location: 8546-8774 bp Feature: domain Description: CollagenBindB Location: 8546-8774 bp Feature: domain Description: SpaA Location: 8963-9218 bp Feature: domain Description: SpaA Location: 8963-92 18 bp Feature: gene Location: 9860-11309 bp Feature: domain Description: IscR Location: 9863-10262 bp Feature: domain Description: IscR Location: 9863-102 62 bp Feature: domain Description: RpfG Location: 10424-10985 bp Feature: domain Description: RpfG Location: 1042 4-10985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), RVT-GII, HTH_30 (pfam13556), SpaA (pfam17802), CollagenBindB (cl15753), RpfG (COG3437)

Seq: QRWH01000008.1 Dorea formicigenerans strain AF19-4AC AF19-4AC.Scaf8, whole genome shotgun sequence (113205 bp)
Overview 1 RT 1: 106223-111054 bp Neighborhood of RT #1 [106223, 111059] LexA_DNA_bind PRK03103 RVT_N RVT-GII GIIM HipB COG2932 XRE Feature: gene Location: 106223-106435 bp Ori: RGT08511.1 Feature: domain Description: LexA_DNA_bind Location: 106232-106421 bp Feature: domain Description: LexA_DNA_bind Location: 10623 2-106421 bp Feature: gene Location: 106450-107640 bp Ori: RGT08518.1 Feature: domain Description: PRK03103 Location: 106462-107572 bp Feature: domain Description: PRK03 103 Location: 106462-107572 bp Feature: gene Location: 107775-109244 bp Ori: RGT08512.1 Gene: ltrA Feature: domain Description: RVT_N Location: 107820-108057 bp Feature: domain Description: RVT_N Location: 107820-108057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108108-108756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108108-108756 bp Feature: domain Description: GIIM Note: maturase Location: 108807-109041 bp Feature: domain Description: GIIM Note: maturase Location: 108807-109041 bp Feature: gene Location: 110071-110802 bp Ori: RGT08513.1 Feature: domain Description: HipB Location: 110083-110299 bp Feature: domain Description: HipB Location: 110083 -110299 bp Feature: domain Description: COG2932 Location: 110455-110767 bp Feature: domain Description: COG293 2 Location: 110455-110767 bp Feature: gene Location: 110859-111059 bp Ori: RGT08514.1 Feature: domain Description: XRE Location: 110871-111054 bp Feature: domain Description: XRE Location: 110871-111054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LexA_DNA_bind (pfam01726), PRK03103 (DNA polymerase IV; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), XRE (COG1476)