myRT

myRT report for GCA_003459585.1_ASM345958v1

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Seq: QRWJ01000008.1 Bacteroides uniformis strain AF19-3LB AF19-3LB.Scaf8, whole genome shotgun sequence (185311 bp)
Overview 1 RT 1: 91489-95422 bp Neighborhood of RT #1 [91489, 95422] RVT-UG27 Feature: gene Location: 91489-91968 bp Feature: gene Location: 92018-92515 bp Feature: gene Location: 92838-94100 bp Ori: RGT14025.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 93030-93666 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 93030-93666 bp Feature: gene Location: 94093-94761 bp Feature: gene Location: 94775-95422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRWJ01000023.1 Bacteroides uniformis strain AF19-3LB AF19-3LB.Scaf23, whole genome shotgun sequence (46830 bp)
Overview 1 RT 1: 2920-8923 bp Neighborhood of RT #1 [2920, 8931] HTH_LUXR IS285 RVT_N RVT-GII GIIM DUF4948 Feature: gene Location: 2920-3978 bp Ori: RGT09219.1 Feature: domain Description: HTH_LUXR Location: 3751-3889 bp Feature: domain Description: HTH_LUXR Location: 3751-3889 bp Feature: gene Location: 4197-5402 bp Ori: RGT09220.1 Feature: domain Description: IS285 Location: 4236-5391 bp Feature: domain Description: IS2 85 Location: 42 36-5391 bp Feature: gene Location: 5774-7264 bp Ori: RGT09221.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5843-6086 bp Feature: domain Description: RVT_N Location: 5843-6086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6131-6776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6131-6776 bp Feature: domain Description: GIIM Note: maturase Location: 6830-7064 bp Feature: domain Description: GIIM Note: maturase Location: 6830-7064 bp Feature: gene Location: 8006-8317 bp Feature: gene Location: 8341-8931 bp Ori: RGT09223.1 Feature: domain Description: DUF4948 Location: 8413-8923 bp Feature: domain Description: DUF4948 Location: 8413-892 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_LUXR (smart00421), IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4948 (pfam16306)

Seq: QRWJ01000051.1 Bacteroides uniformis strain AF19-3LB AF19-3LB.Scaf51, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 1-1894 bp Neighborhood of RT #1 [1, 1920] RVT-GII matK HNHc Feature: gene Location: 1-122 bp Feature: gene Location: 115-1920 bp Ori: RGT07238.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 79-1201 bp Feature: domain Description: matK Location: 1375-1591 bp Feature: domain Description: matK Location: 13 75-1591 bp Feature: domain Description: HNHc Note: nucleases Location: 1753-1894 bp Feature: domain Description: HNHc Note: nucleases Location: 1753 -1894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, matK (CHL00002), HNHc (smart00507)