myRT

myRT report for GCA_003459805.1_ASM345980v1

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Seq: QRWX01000006.1 Solobacterium moorei strain AF18-46 AF18-46.Scaf6, whole genome shotgun sequence (5600 bp)
Overview 1 RT 1: 1-5426 bp Neighborhood of RT #1 [1, 5575] RVT-GII GIIM COG4932 COG4932 CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB Transposase_20 Feature: gene Location: 1-1251 bp Ori: RGT53463.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-826 bp Feature: domain Description: GIIM Note: maturase Location: 874-1093 bp Feature: domain Description: GIIM Note: maturase Location: 874-1 093 bp Feature: gene Location: 1835-4846 bp Ori: RGT53461.1 Feature: domain Description: COG4932 Location: 1946-2120 bp Feature: domain Description: COG4932 Location: 1 946-21 20 bp Feature: domain Description: COG4932 Location: 2144-3128 bp Feature: domain Description: COG4932 Location: 21 44-31 28 bp Feature: domain Description: CollagenBindB Location: 3137-3386 bp Feature: domain Description: CollagenBindB Location: 31 37-3386 bp Feature: domain Description: CollagenBindB Location: 3404-3656 bp Feature: domain Description: CollagenBindB Location: 3404-3656 bp Feature: domain Description: CollagenBindB Location: 3674-3920 bp Feature: domain Description: CollagenBindB Location: 3674-3920 bp Feature: domain Description: CollagenBindB Location: 3938-4190 bp Feature: domain Description: CollagenBindB Location: 3938-41 90 bp Feature: domain Description: CollagenBindB Location: 4208-4457 bp Feature: domain Description: CollagenBindB Location: 4208-4457 bp Feature: domain Description: CollagenBindB Location: 4475-4727 bp Feature: domain Description: CollagenBindB Location: 4475-4727 bp Feature: gene Location: 5114-5575 bp Ori: RGT53462.1 Feature: domain Description: Transposase_20 Location: 5201-5426 bp Feature: domain Description: Transposase_20 Location: 5201 -5426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4932 (Uncharacterized surface anchored protein ), CollagenBindB (cl15753), Transposase_20 (pfam02371)

Seq: QRWX01000004.1 Solobacterium moorei strain AF18-46 AF18-46.Scaf4, whole genome shotgun sequence (151033 bp)
Overview 1 RT 1: 1-4783 bp 2 RT 2: 15152-20639 bp Neighborhood of RT #1 [1, 4914] RVT-GII GIIM PLDc_unchar4 DUF1998 Neighborhood of RT #2 [15152, 20665] Dcm HTH_26 RVT-GII GIIM TrmA Gph Feature: gene Location: 1-487 bp Feature: gene Location: 654-1949 bp Ori: RGT54204.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1473 bp Feature: domain Description: GIIM Note: maturase Location: 1527-1740 bp Feature: domain Description: GIIM Note: maturase Location: 152 7-1740 bp Feature: gene Location: 2528-3175 bp Ori: RGT54336.1 Feature: domain Description: PLDc_unchar4 Location: 2756-3095 bp Feature: domain Description: PLDc_unchar4 Location: 2 756-3095 bp Feature: gene Location: 3172-4914 bp Ori: RGT54205.1 Feature: domain Description: DUF1998 Location: 4495-4783 bp Feature: domain Description: DUF1998 Location: 4495-4783 bp Feature: gene Location: 15152-16438 bp Ori: RGT54209.1 Feature: domain Description: Dcm Location: 15179-16415 bp Feature: domain Description: Dcm Location: 15179-16415 bp Feature: gene Location: 16451-16681 bp Ori: RGT54210.1 Feature: domain Description: HTH_26 Location: 16472-16649 bp Feature: domain Description: HTH_2 6 Location: 16472 -16649 bp Feature: gene Location: 16918-18222 bp Ori: RGT54211.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17119-17737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17119-17737 bp Feature: domain Description: GIIM Note: maturase Location: 17791-17998 bp Feature: domain Description: GIIM Note: maturase Location: 17791-17998 bp Feature: gene Location: 18903-20036 bp Ori: RGT54212.1 Feature: domain Description: TrmA Location: 18912-20010 bp Feature: domain Description: TrmA Location: 18912 -2 0010 bp Feature: gene Location: 20033-20665 bp Ori: RGT54213.1 Feature: domain Description: Gph Location: 20036-20639 bp Feature: domain Description: Gph Location: 2 0036-2 0639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PLDc_unchar4 (cd09132), DUF1998 (pfam09369), Dcm (COG0270), HTH_26 (pfam13443), TrmA (COG2265), Gph (COG0546)

Seq: QRWX01000001.1 Solobacterium moorei strain AF18-46 AF18-46.Scaf1, whole genome shotgun sequence (722619 bp)
Overview 1 RT 1: 556663-561826 bp 2 RT 2: 619507-625960 bp 3 RT 3: 719116-722461 bp Neighborhood of RT #1 [556663, 561998] CydD MdlB RVT-GII PRK06762 HipB Neighborhood of RT #2 [619507, 626136] MurF RVT-AbiA HEPN_AbiA_CTD MFS_YxiO_like RnaY Neighborhood of RT #3 [719116, 722619] LytT SPOB_a HATPase_AgrC-ComD-like RVT-GII GIIM Feature: gene Location: 556663-558396 bp Ori: RGT57981.1 Feature: domain Description: CydD Location: 556720-558379 bp Feature: domain Description: CydD Location: 556720-5583 79 bp Feature: gene Location: 558393-560075 bp Ori: RGT57982.1 Feature: domain Description: MdlB Location: 558429-560061 bp Feature: domain Description: MdlB Location: 558429-560061 bp Feature: gene Location: 560101-560801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560104-560305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560104-5603 05 bp Feature: gene Location: 560947-561444 bp Ori: RGT57983.1 Feature: domain Description: PRK06762 Location: 560953-561436 bp Feature: domain Description: PRK06762 Location: 560953 -56143 6 bp Feature: gene Location: 561586-561998 bp Feature: domain Description: HipB Location: 561616-561826 bp Feature: domain Description: HipB Location: 561616-561826 bp Feature: gene Location: 619507-621078 bp Ori: RGT58034.1 Feature: domain Description: MurF Location: 620023-621055 bp Feature: domain Description: MurF Location: 620023 -621055 bp Feature: gene Location: 621451-621843 bp Feature: gene Location: 621887-623755 bp Ori: RGT58036.1 Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 622232-622760 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 62223 2-622760 bp Feature: domain Description: HEPN_AbiA_CTD Location: 623357-623747 bp Feature: domain Description: HEPN_AbiA_CTD Location: 623 3 57-623 747 bp Feature: gene Location: 623910-625142 bp Ori: RGT58037.1 Feature: domain Description: MFS_YxiO_like Location: 623946-625119 bp Feature: domain Description: MFS_YxiO_like Location: 623 946-625119 bp Feature: gene Location: 625651-626136 bp Ori: RGT58038.1 Feature: domain Description: RnaY Location: 625759-625960 bp Feature: domain Description: RnaY Location: 625759-625960 bp Feature: gene Location: 719116-719841 bp Ori: RGT58126.1 Feature: domain Description: LytT Location: 719119-719743 bp Feature: domain Description: LytT Location: 719119-719743 bp Feature: gene Location: 720171-720818 bp Ori: RGT58151.1 Feature: domain Description: SPOB_a Location: 720222-720378 bp Feature: domain Description: SPOB_a Location: 720222-7203 78 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 720414-720810 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 720414-720810 bp Feature: gene Location: 721369-722619 bp Ori: RGT58127.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721576-722194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721576-722194 bp Feature: domain Description: GIIM Note: maturase Location: 722242-722461 bp Feature: domain Description: GIIM Note: maturase Location: 722242-722461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CydD (TIGR02857), MdlB (COG1132), RVT-GII, PRK06762 (hypothetical protein; Provisional), HipB (COG1396), MurF (COG0770), RVT-AbiA, HEPN_AbiA_CTD (pfam18732), MFS_YxiO_like (cd17482), RnaY (COG1418)
LytT (COG3279), SPOB_a (pfam14689), HATPase_AgrC-ComD-like (cd16935), GIIM (pfam08388)