myRT

myRT report for GCA_003460025.1_ASM346002v1

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Seq: QRXP01000010.1 Bacteroides faecis strain AF17-5AC AF17-5AC.Scaf10, whole genome shotgun sequence (159032 bp)
Overview 1 RT 1: 150740-154117 bp Neighborhood of RT #1 [150740, 154209] RVT-Retrons HTH_17 Feature: gene Location: 150740-151104 bp Feature: gene Location: 151369-152250 bp Feature: gene Location: 152281-153138 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152443-152968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 52443-1 52968 bp Feature: gene Location: 153163-153384 bp Feature: gene Location: 153844-154209 bp Feature: domain Description: HTH_17 Location: 153979-154117 bp Feature: domain Description: HTH_1 7 Location: 1 53979-1 541 1 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_17 (pfam12728)

Seq: QRXP01000004.1 Bacteroides faecis strain AF17-5AC AF17-5AC.Scaf4, whole genome shotgun sequence (199996 bp)
Overview 1 RT 1: 197078-199986 bp Neighborhood of RT #1 [197078, 199986] RVT-GII GIIM Feature: gene Location: 197078-197386 bp Feature: gene Location: 197420-197623 bp Feature: gene Location: 197964-199259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198159-198774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198159-198774 bp Feature: domain Description: GIIM Note: maturase Location: 198846-199059 bp Feature: domain Description: GIIM Note: maturase Location: 198846-199059 bp Feature: gene Location: 199789-199986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRXP01000035.1 Bacteroides faecis strain AF17-5AC AF17-5AC.Scaf35, whole genome shotgun sequence (68426 bp)
Overview 1 RT 1: 63342-67972 bp Neighborhood of RT #1 [63342, 68061] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 63342-64409 bp Feature: domain Description: AAA_25 Location: 63477-63939 bp Feature: domain Description: AAA_25 Location: 63 477-63 93 9 bp Feature: gene Location: 64621-64788 bp Feature: gene Location: 65352-67160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65616-66438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65616-6643 8 bp Feature: domain Description: Intron_maturas2 Location: 66507-66816 bp Feature: domain Description: Intron_maturas2 Location: 66507-66816 bp Feature: gene Location: 67150-68061 bp Feature: domain Description: Toprim_2 Location: 67684-67972 bp Feature: domain Description: Toprim_2 Location: 67684-67972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QRXP01000025.1 Bacteroides faecis strain AF17-5AC AF17-5AC.Scaf25, whole genome shotgun sequence (86159 bp)
Overview 1 RT 1: 36739-40964 bp Neighborhood of RT #1 [36739, 41110] DDE_Tnp_IS66_C DDE_Tnp_IS66 RVT-GII RVT-GII GIIM GT4_WbuB-like Feature: gene Location: 36739-36912 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 36775-36874 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 36775-36874 bp Feature: gene Location: 36879-37094 bp Feature: domain Description: DDE_Tnp_IS66 Location: 36915-37062 bp Feature: domain Description: DDE_Tnp_IS66 Location: 36915-37062 bp Feature: gene Location: 37343-37612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37352-37460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37352-374 60 bp Feature: gene Location: 37719-38963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37923-38577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37923-38577 bp Feature: domain Description: GIIM Note: maturase Location: 38658-38889 bp Feature: domain Description: GIIM Note: maturase Location: 38658-38889 bp Feature: gene Location: 39683-39862 bp Feature: gene Location: 39965-41110 bp Feature: domain Description: GT4_WbuB-like Location: 40013-40964 bp Feature: domain Description: GT4 _WbuB-like Location: 4 0013-4 0964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), GT4_WbuB-like (cd03794)

Seq: QRXP01000018.1 Bacteroides faecis strain AF17-5AC AF17-5AC.Scaf18, whole genome shotgun sequence (110521 bp)
Overview 1 RT 1: 2666-15484 bp Neighborhood of RT #1 [2666, 15484] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 2666-4462 bp Feature: domain Description: rpsA Location: 2735-4346 bp Feature: domain Description: rpsA Location: 2735 -4346 bp Feature: gene Location: 4631-10504 bp Feature: domain Description: DUF4011 Location: 5795-6305 bp Feature: domain Description: DUF4011 Location: 5 795 -6305 bp Feature: domain Description: DEXXQc_SF1 Location: 6644-7253 bp Feature: domain Description: DEXXQc_SF1 Location: 6644-725 3 bp Feature: domain Description: DEXXQc_SF1 Location: 7916-8831 bp Feature: domain Description: DEXXQc_SF1 Location: 7916-8831 bp Feature: domain Description: KOG1803 Location: 8966-9344 bp Feature: domain Description: KOG1803 Location: 8966-9344 bp Feature: domain Description: MTES_1575 Location: 9503-9791 bp Feature: domain Description: MTES_15 75 Location: 95 03-9791 bp Feature: domain Description: DUF3320 Location: 10022-10142 bp Feature: domain Description: DUF3320 Location: 10022-10142 bp Feature: gene Location: 10546-11679 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10870-11416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10870-11416 bp Feature: gene Location: 11884-14043 bp Feature: gene Location: 15284-15484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: QRXP01000046.1 Bacteroides faecis strain AF17-5AC AF17-5AC.Scaf46, whole genome shotgun sequence (41562 bp)
Overview 1 RT 1: 36800-41562 bp Neighborhood of RT #1 [36800, 41562] Relaxase YWFCY RVT_N RVT-GII GIIM Feature: gene Location: 36800-38047 bp Feature: domain Description: Relaxase Location: 36980-37361 bp Feature: domain Description: Relaxase Location: 36 980-3736 1 bp Feature: gene Location: 38078-39001 bp Feature: domain Description: YWFCY Location: 38087-38264 bp Feature: domain Description: YWFCY Location: 38087-3826 4 bp Feature: gene Location: 39757-41409 bp Feature: RT Description: RVT_N Location: 39811-40054 bp Feature: RT Description: RVT_N Location: 39811-40054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40099-40747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40099-40747 bp Feature: domain Description: GIIM Note: maturase Location: 40801-41032 bp Feature: domain Description: GIIM Note: maturase Location: 40801-41032 bp Feature: gene Location: 41414-41562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)