myRT

myRT report for GCA_003460035.1_ASM346003v1

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Seq: QRXS01000004.1 Bacteroides cellulosilyticus strain AF17-25 AF17-25.Scaf4, whole genome shotgun sequence (506903 bp)
Overview 1 RT 1: 51599-56775 bp Neighborhood of RT #1 [51599, 56783] COG1237 secD RVT-Retrons MFS_DtpA_like HptA Feature: gene Location: 51599-52405 bp Feature: domain Description: COG1237 Location: 51602-52400 bp Feature: domain Description: COG1 237 Location: 51 602-52400 bp Feature: gene Location: 52425-53279 bp Feature: domain Description: secD Location: 52620-52896 bp Feature: domain Description: secD Location: 52620-52896 bp Feature: gene Location: 53276-54397 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53588-54140 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53588-541 40 bp Feature: gene Location: 54669-56207 bp Feature: domain Description: MFS_DtpA_like Location: 54690-56178 bp Feature: domain Description: MFS_DtpA_like Location: 54690-561 78 bp Feature: gene Location: 56247-56783 bp Feature: domain Description: HptA Location: 56265-56775 bp Feature: domain Description: HptA Location: 56265-56775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1237 (Metal-dependent hydrolase, beta-lactamase superfamily II ), secD (TIGR01129), RVT-Retrons, MFS_DtpA_like (cd17346), HptA (COG0634)

Seq: QRXS01000003.1 Bacteroides cellulosilyticus strain AF17-25 AF17-25.Scaf3, whole genome shotgun sequence (675519 bp)
Overview 1 RT 1: 287756-294006 bp Neighborhood of RT #1 [287756, 294257] DUF4373 PDDEXK_2 PDDEXK_2 RVT_N RVT-GII GIIM ComA-like_MBL-fold Feature: gene Location: 287756-288652 bp Feature: domain Description: DUF4373 Location: 287774-288026 bp Feature: domain Description: DUF4373 Location: 2 87774-2 8802 6 bp Feature: gene Location: 288962-289783 bp Feature: domain Description: PDDEXK_2 Location: 288974-289295 bp Feature: domain Description: PDDEXK_2 Location: 2 88974-2 892 95 bp Feature: domain Description: PDDEXK_2 Location: 289451-289634 bp Feature: domain Description: PDDEXK_2 Location: 2 89451-2 89634 bp Feature: gene Location: 289923-291557 bp Feature: RT Description: RVT_N Location: 289977-290220 bp Feature: RT Description: RVT_N Location: 2 89977-2 902 2 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290265-290910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 902 65-2 90910 bp Feature: domain Description: GIIM Note: maturase Location: 290961-291195 bp Feature: domain Description: GIIM Note: maturase Location: 2 90961-2 91195 bp Feature: gene Location: 292326-293093 bp Feature: gene Location: 293292-294257 bp Feature: domain Description: ComA-like_MBL-fold Location: 293403-294006 bp Feature: domain Description: ComA-like_MBL-fold Location: 2 93403-2 94006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4373 (pfam14297), PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ComA-like_MBL-fold (cd07731)

Seq: QRXS01000008.1 Bacteroides cellulosilyticus strain AF17-25 AF17-25.Scaf8, whole genome shotgun sequence (273384 bp)
Overview 1 RT 1: 232180-241681 bp Neighborhood of RT #1 [232180, 241681] Mor RVT-DGRs Feature: gene Location: 232180-232422 bp Feature: domain Description: Mor Location: 232273-232399 bp Feature: domain Description: Mor Location: 23 2273 -23 23 99 bp Feature: gene Location: 232608-233093 bp Feature: gene Location: 233090-234391 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 233303-233897 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23 3 3 03 -23 3 897 bp Feature: gene Location: 234767-235000 bp Feature: gene Location: 235130-241681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mor (pfam08765), RVT-DGRs

Seq: QRXS01000010.1 Bacteroides cellulosilyticus strain AF17-25 AF17-25.Scaf10, whole genome shotgun sequence (255643 bp)
Overview 1 RT 1: 31656-39407 bp Neighborhood of RT #1 [31656, 39415] DUF5123 DUF5123 RVT-GII GIIM Reg_prop Reg_prop Reg_prop COG3292 Y_Y_Y PRK15347 PRK15347 YesN Feature: gene Location: 31656-32621 bp Feature: domain Description: DUF5123 Location: 32040-32202 bp Feature: domain Description: DUF5123 Location: 3204 0-32202 bp Feature: domain Description: DUF5123 Location: 32277-32616 bp Feature: domain Description: DUF5123 Location: 32277-32616 bp Feature: gene Location: 32866-33108 bp Feature: gene Location: 33138-34532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33468-34086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334 68-34 086 bp Feature: domain Description: GIIM Note: maturase Location: 34143-34371 bp Feature: domain Description: GIIM Note: maturase Location: 34 14 3-34 371 bp Feature: gene Location: 34492-34701 bp Feature: gene Location: 35135-39415 bp Feature: domain Description: Reg_prop Location: 35246-35315 bp Feature: domain Description: Reg_prop Location: 3524 6-35315 bp Feature: domain Description: Reg_prop Location: 36575-36629 bp Feature: domain Description: Reg_prop Location: 36575-36629 bp Feature: domain Description: Reg_prop Location: 36716-36782 bp Feature: domain Description: Reg_prop Location: 36716-36782 bp Feature: domain Description: COG3292 Location: 37010-37415 bp Feature: domain Description: COG3292 Location: 37010-374 15 bp Feature: domain Description: Y_Y_Y Location: 37550-37739 bp Feature: domain Description: Y_Y_Y Location: 37550-37739 bp Feature: domain Description: PRK15347 Location: 37874-38549 bp Feature: domain Description: PRK1534 7 Location: 37874 -3854 9 bp Feature: domain Description: PRK15347 Location: 38663-39008 bp Feature: domain Description: PRK1534 7 Location: 38663-39008 bp Feature: domain Description: YesN Location: 39104-39407 bp Feature: domain Description: YesN Location: 39104 -394 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5123 (pfam17161), RVT-GII, GIIM (pfam08388), Reg_prop (pfam07494), COG3292 (Periplasmic ligand-binding sensor domain ), Y_Y_Y (pfam07495), PRK15347 (two component system sensor kinase), YesN (COG4753)