myRT

myRT report for GCA_003460255.1_ASM346025v1

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Seq: QRXF01000005.1 [Eubacterium] rectale strain AF18-18LB AF18-18LB.Scaf5, whole genome shotgun sequence (169181 bp)
Overview 1 RT 1: 166378-169088 bp Neighborhood of RT #1 [166378, 169088] FeoA FeoA RVT-GII RVT-GII GIIM Feature: gene Location: 166378-166599 bp Ori: RGT77558.1 Feature: domain Description: FeoA Location: 166387-166597 bp Feature: domain Description: FeoA Location: 1 66387-1 66597 bp Feature: gene Location: 166779-166991 bp Ori: RGT77559.1 Feature: domain Description: FeoA Location: 166785-166989 bp Feature: domain Description: FeoA Location: 1 66785-1 66989 bp Feature: gene Location: 167302-168738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167620-167881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67620-1 67881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167896-168286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67896-1 68286 bp Feature: domain Description: GIIM Note: maturase Location: 168343-168565 bp Feature: domain Description: GIIM Note: maturase Location: 1 68343-1 68565 bp Feature: gene Location: 168846-169088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FeoA (smart00899), RVT-GII, GIIM (pfam08388)

Seq: QRXF01000004.1 [Eubacterium] rectale strain AF18-18LB AF18-18LB.Scaf4, whole genome shotgun sequence (218325 bp)
Overview 1 RT 1: 31499-36112 bp 2 RT 2: 127503-134142 bp Neighborhood of RT #1 [31499, 36135] TnpV HTH_XRE RVT-Retrons met_A_Alw26 met_A_Alw26 BsuBI_PstI_RE_N BsuBI_PstI_RE Neighborhood of RT #2 [127503, 134142] Tn916-Xis Integrase_DNA Phage_int_SAM_5 INT_ICEBs1_C_like RVT-CRISPR cas1_HMARI TIR_2 Feature: gene Location: 31499-31873 bp Ori: RGT77793.1 Feature: domain Description: TnpV Location: 31541-31850 bp Feature: domain Description: TnpV Location: 31541-31850 bp Feature: gene Location: 32422-32736 bp Ori: RGT77794.1 Feature: domain Description: HTH_XRE Location: 32443-32599 bp Feature: domain Description: HTH_XRE Location: 32 443-32 599 bp Feature: gene Location: 32729-33715 bp Ori: RGT77795.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32870-33410 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 870-33410 bp Feature: gene Location: 33741-35225 bp Ori: RGT77796.1 Feature: domain Description: met_A_Alw26 Location: 33807-34218 bp Feature: domain Description: met_A_Alw2 6 Location: 33807-342 18 bp Feature: domain Description: met_A_Alw26 Location: 34260-35151 bp Feature: domain Description: met_A_Alw2 6 Location: 342 60-35151 bp Feature: gene Location: 35218-36135 bp Ori: RGT77797.1 Feature: domain Description: BsuBI_PstI_RE_N Location: 35224-35620 bp Feature: domain Description: BsuBI_PstI_RE_N Location: 352 2 4-3562 0 bp Feature: domain Description: BsuBI_PstI_RE Location: 35659-36112 bp Feature: domain Description: BsuBI_PstI_RE Location: 35659-36112 bp Feature: gene Location: 127503-127706 bp Ori: RGT77889.1 Feature: domain Description: Tn916-Xis Location: 127512-127692 bp Feature: domain Description: Tn916-Xis Location: 12 7512 -12 7692 bp Feature: gene Location: 127785-128975 bp Ori: RGT77890.1 Feature: domain Description: Integrase_DNA Location: 127797-128001 bp Feature: domain Description: Integrase_DNA Location: 12 7797-12 8001 bp Feature: domain Description: Phage_int_SAM_5 Location: 128055-128310 bp Feature: domain Description: Phage_int_SAM_5 Location: 12 8055-12 8310 bp Feature: domain Description: INT_ICEBs1_C_like Location: 128373-128928 bp Feature: domain Description: INT_ICEBs1_C_like Location: 12 8373-12 892 8 bp Feature: gene Location: 129171-131066 bp Ori: RGT77891.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 129366-129939 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 12 9366-12 9939 bp Feature: domain Description: cas1_HMARI Location: 130080-131058 bp Feature: domain Description: cas1_HMARI Location: 130080-131058 bp Feature: gene Location: 131982-133553 bp Ori: RGT77892.1 Feature: domain Description: TIR_2 Location: 133152-133419 bp Feature: domain Description: TIR_2 Location: 133152 -133419 bp Feature: gene Location: 133837-134142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), HTH_XRE (smart00530), RVT-Retrons, met_A_Alw26 (TIGR02987), BsuBI_PstI_RE_N (pfam17728), BsuBI_PstI_RE (pfam06616), Tn916-Xis (pfam09035), Integrase_DNA (pfam02920), Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189)
RVT-CRISPR, cas1_HMARI (TIGR03641), TIR_2 (pfam13676)

Seq: QRXF01000027.1 [Eubacterium] rectale strain AF18-18LB AF18-18LB.Scaf27, whole genome shotgun sequence (46040 bp)
Overview 1 RT 1: 5984-9614 bp Neighborhood of RT #1 [5984, 9820] Phage_XkdX RVT-DGRs SH3_3 Feature: gene Location: 5984-6136 bp Ori: RGT74268.1 Feature: domain Description: Phage_XkdX Location: 6005-6116 bp Feature: domain Description: Phage_XkdX Location: 6005-6116 bp Feature: gene Location: 6138-6359 bp Feature: gene Location: 6373-7758 bp Ori: RGT74270.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6586-7327 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6586-73 27 bp Feature: gene Location: 8123-9418 bp Feature: gene Location: 9422-9820 bp Ori: RGT74272.1 Feature: domain Description: SH3_3 Location: 9461-9614 bp Feature: domain Description: SH3 _3 Location: 9461-9614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, SH3_3 (pfam08239)

Seq: QRXF01000020.1 [Eubacterium] rectale strain AF18-18LB AF18-18LB.Scaf20, whole genome shotgun sequence (52325 bp)
Overview 1 RT 1: 15074-19937 bp Neighborhood of RT #1 [15074, 20356] Phage_holin_4_1 RVT-DGRs DUF2313 Feature: gene Location: 15074-15496 bp Ori: RGT75511.1 Feature: domain Description: Phage_holin_4_1 Location: 15119-15473 bp Feature: domain Description: Phage_holin_4 _1 Location: 15119-154 73 bp Feature: gene Location: 15924-16190 bp Feature: gene Location: 16150-17355 bp Ori: RGT75471.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16354-17056 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16354 -17056 bp Feature: gene Location: 17742-19547 bp Feature: gene Location: 19562-20356 bp Ori: RGT75473.1 Feature: domain Description: DUF2313 Location: 19580-19937 bp Feature: domain Description: DUF2313 Location: 19580-19937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, DUF2313 (pfam10076)