myRT

myRT report for GCA_003460265.1_ASM346026v1

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Seq: QRXG01000031.1 [Eubacterium] rectale strain AF18-16LB AF18-16LB.Scaf31, whole genome shotgun sequence (39149 bp)
Overview 1 RT 1: 31975-37234 bp Neighborhood of RT #1 [31975, 37257] DUF2313 RVT-DGRs Phage_holin_4_1 Feature: gene Location: 31975-32769 bp Ori: RGT78881.1 Feature: domain Description: DUF2313 Location: 31993-32350 bp Feature: domain Description: DUF231 3 Location: 31 993-32350 bp Feature: gene Location: 32784-34589 bp Feature: gene Location: 34976-36181 bp Ori: RGT78883.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35180-35882 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 351 80-35882 bp Feature: gene Location: 36141-36407 bp Feature: gene Location: 36835-37257 bp Ori: RGT78890.1 Feature: domain Description: Phage_holin_4_1 Location: 36880-37234 bp Feature: domain Description: Phage_holin_4_1 Location: 36880-37234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2313 (pfam10076), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: QRXG01000009.1 [Eubacterium] rectale strain AF18-16LB AF18-16LB.Scaf9, whole genome shotgun sequence (104846 bp)
Overview 1 RT 1: 101345-104753 bp Neighborhood of RT #1 [101345, 104753] RVT-GII GIIM Feature: gene Location: 101345-101929 bp Feature: gene Location: 101964-102737 bp Feature: gene Location: 102963-104403 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103281-103905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032 81-103905 bp Feature: domain Description: GIIM Note: maturase Location: 103962-104166 bp Feature: domain Description: GIIM Note: maturase Location: 103962 -104166 bp Feature: gene Location: 104511-104753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRXG01000018.1 [Eubacterium] rectale strain AF18-16LB AF18-16LB.Scaf18, whole genome shotgun sequence (59382 bp)
Overview 1 RT 1: 44472-48288 bp Neighborhood of RT #1 [44472, 48308] SH3_3 RVT-DGRs Phage_XkdX Feature: gene Location: 44472-44870 bp Ori: RGT80233.1 Feature: domain Description: SH3_3 Location: 44511-44664 bp Feature: domain Description: SH3 _3 Location: 44511-44664 bp Feature: gene Location: 44874-46169 bp Feature: gene Location: 46534-47919 bp Ori: RGT80235.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46747-47488 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46747-47488 bp Feature: gene Location: 47933-48154 bp Feature: gene Location: 48156-48308 bp Ori: RGT80237.1 Feature: domain Description: Phage_XkdX Location: 48177-48288 bp Feature: domain Description: Phage_XkdX Location: 48177-48288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SH3_3 (pfam08239), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QRXG01000004.1 [Eubacterium] rectale strain AF18-16LB AF18-16LB.Scaf4, whole genome shotgun sequence (196457 bp)
Overview 1 RT 1: 31499-36112 bp 2 RT 2: 102768-112274 bp Neighborhood of RT #1 [31499, 36135] TnpV HTH_XRE RVT-Retrons met_A_Alw26 met_A_Alw26 BsuBI_PstI_RE_N BsuBI_PstI_RE Neighborhood of RT #2 [102768, 112274] Cas2_I_II_III RVT-CRISPR cas1_HMARI TIR_2 Feature: gene Location: 31499-31873 bp Ori: RGT83122.1 Feature: domain Description: TnpV Location: 31541-31850 bp Feature: domain Description: TnpV Location: 3154 1-31850 bp Feature: gene Location: 32422-32736 bp Ori: RGT83123.1 Feature: domain Description: HTH_XRE Location: 32443-32599 bp Feature: domain Description: HTH_XRE Location: 324 4 3-32599 bp Feature: gene Location: 32729-33715 bp Ori: RGT83124.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32870-33410 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32870-334 10 bp Feature: gene Location: 33741-35225 bp Ori: RGT83125.1 Feature: domain Description: met_A_Alw26 Location: 33807-34218 bp Feature: domain Description: met_A_Alw26 Location: 33807-34 218 bp Feature: domain Description: met_A_Alw26 Location: 34260-35151 bp Feature: domain Description: met_A_Alw26 Location: 34 260-35151 bp Feature: gene Location: 35218-36135 bp Ori: RGT83126.1 Feature: domain Description: BsuBI_PstI_RE_N Location: 35224-35620 bp Feature: domain Description: BsuBI_PstI_RE_N Location: 35224 -35620 bp Feature: domain Description: BsuBI_PstI_RE Location: 35659-36112 bp Feature: domain Description: BsuBI_PstI_RE Location: 35659-36112 bp Feature: gene Location: 102768-107006 bp Feature: gene Location: 107024-107284 bp Ori: RGT83196.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 107033-107261 bp Feature: domain Description: Cas2_I_II_III Location: 107033-107261 bp Feature: gene Location: 107303-109198 bp Ori: RGT83197.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 107498-108071 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1074 98-108071 bp Feature: domain Description: cas1_HMARI Location: 108212-109190 bp Feature: domain Description: cas1_HMARI Location: 108212-109190 bp Feature: gene Location: 110114-111685 bp Ori: RGT83198.1 Feature: domain Description: TIR_2 Location: 111284-111551 bp Feature: domain Description: TIR_2 Location: 111284 -111551 bp Feature: gene Location: 111969-112274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), HTH_XRE (smart00530), RVT-Retrons, met_A_Alw26 (TIGR02987), BsuBI_PstI_RE_N (pfam17728), BsuBI_PstI_RE (pfam06616), Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641), TIR_2 (pfam13676)