myRT

myRT report for GCA_003460505.1_ASM346050v1

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Seq: QTVG01000001.1 Eubacterium sp. AF36-5BH AF36-5BH.Scaf1, whole genome shotgun sequence (339295 bp)
Overview 1 RT 1: 1-4267 bp Neighborhood of RT #1 [1, 4308] RVT-GII KOG4768 VirD4 DUF3801 Feature: gene Location: 1-77 bp Feature: gene Location: 115-1938 bp Ori: RGF52846.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 5-1 1 1 7 bp Feature: domain Description: KOG4768 Location: 1231-1351 bp Feature: domain Description: KOG4768 Location: 1 231 -1 351 bp Feature: gene Location: 2624-3193 bp Ori: RGF52847.1 Feature: domain Description: VirD4 Location: 2777-3149 bp Feature: domain Description: VirD4 Location: 2777-31 49 bp Feature: gene Location: 3193-4308 bp Ori: RGF52848.1 Feature: domain Description: DUF3801 Location: 3292-4267 bp Feature: domain Description: DUF3801 Location: 3292-4267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), VirD4 (COG3505), DUF3801 (pfam12687)

Seq: QTVG01000007.1 Eubacterium sp. AF36-5BH AF36-5BH.Scaf7, whole genome shotgun sequence (258018 bp)
Overview 1 RT 1: 34978-39226 bp 2 RT 2: 52639-55798 bp Neighborhood of RT #1 [34978, 39516] PRK06762 RVT-Retrons UPRTase Neighborhood of RT #2 [52639, 55950] YozG RVT-UG17 SLATT_5 HTH_38 Feature: gene Location: 34978-36063 bp Feature: gene Location: 36689-36763 bp Feature: domain Description: PRK06762 Location: 36692-36761 bp Feature: domain Description: PRK06762 Location: 36692 -36761 bp Feature: gene Location: 37055-38074 bp Ori: RGF49923.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37280-37832 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 372 80-37832 bp Feature: gene Location: 38336-38620 bp Feature: gene Location: 38623-39516 bp Ori: RGF49925.1 Feature: domain Description: UPRTase Location: 38986-39226 bp Feature: domain Description: UPRTase Location: 38986-392 2 6 bp Feature: gene Location: 52639-52860 bp Ori: RGF49935.1 Feature: domain Description: YozG Location: 52654-52852 bp Feature: domain Description: YozG Location: 52 654-52 852 bp Feature: gene Location: 52927-53118 bp Feature: gene Location: 53417-54727 bp Ori: RGF49937.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 53645-54230 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 53645-542 30 bp Feature: gene Location: 54728-55324 bp Ori: RGF49938.1 Feature: domain Description: SLATT_5 Location: 54773-55310 bp Feature: domain Description: SLATT_5 Location: 54773-55310 bp Feature: gene Location: 55657-55950 bp Ori: RGF49939.1 Feature: domain Description: HTH_38 Location: 55684-55798 bp Feature: domain Description: HTH_38 Location: 55684-55798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06762 (hypothetical protein; Provisional), RVT-Retrons, UPRTase (pfam14681), YozG (COG3655), RVT-UG17, SLATT_5 (pfam18160), HTH_38 (pfam13936)