myRT

myRT report for GCA_003460625.1_ASM346062v1

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Seq: QTVO01000009.1 Ruminococcus sp. AF31-14BH AF31-14BH.Scaf9, whole genome shotgun sequence (124960 bp)
Overview 1 RT 1: 1739-8677 bp Neighborhood of RT #1 [1739, 8677] YtfP RVT-UG24 DDE_Tnp_1_assoc Feature: gene Location: 1739-2764 bp Ori: RGF73209.1 Feature: domain Description: YtfP Location: 1862-2117 bp Feature: domain Description: YtfP Location: 1 862-21 1 7 bp Feature: gene Location: 2943-3464 bp Feature: gene Location: 3468-7001 bp Ori: RGF73211.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 4014-4491 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 401 4-4491 bp Feature: gene Location: 7089-8209 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 7113-7362 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 71 1 3-7362 bp Feature: gene Location: 8456-8677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtfP (COG2105), RVT-UG24, DDE_Tnp_1_assoc (pfam13808)

Seq: QTVO01000011.1 Ruminococcus sp. AF31-14BH AF31-14BH.Scaf11, whole genome shotgun sequence (114518 bp)
Overview 1 RT 1: 17530-28697 bp Neighborhood of RT #1 [17530, 28726] IscR HDGYP RVT-GII HTH_30 SpaA CollagenBindB SpaA IscR HDGYP Feature: gene Location: 17530-18990 bp Ori: RGF72816.1 Feature: domain Description: IscR Location: 17533-17935 bp Feature: domain Description: IscR Location: 17533-17935 bp Feature: domain Description: HDGYP Location: 18049-18979 bp Feature: domain Description: HDGYP Location: 18049-18979 bp Feature: gene Location: 19122-19436 bp Feature: gene Location: 19788-20477 bp Ori: RGF72818.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19998-20223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19998-2 02 2 3 bp Feature: domain Description: HTH_30 Location: 20280-20436 bp Feature: domain Description: HTH_30 Location: 2 02 80-2 0436 bp Feature: gene Location: 21134-27265 bp Ori: RGF72819.1 Feature: domain Description: SpaA Location: 25586-25790 bp Feature: domain Description: SpaA Location: 2 5586-2 5790 bp Feature: domain Description: CollagenBindB Location: 25964-26186 bp Feature: domain Description: CollagenBindB Location: 2 5964-2 6186 bp Feature: domain Description: SpaA Location: 26381-26636 bp Feature: domain Description: SpaA Location: 2 6381-2 6636 bp Feature: gene Location: 27278-28726 bp Ori: RGF72820.1 Feature: domain Description: IscR Location: 27281-27680 bp Feature: domain Description: IscR Location: 2 72 81-2 7680 bp Feature: domain Description: HDGYP Location: 27902-28697 bp Feature: domain Description: HDGYP Location: 2 7902 -2 8697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), RVT-GII, HTH_30 (pfam13556), SpaA (pfam17802), CollagenBindB (cl15753)