myRT

myRT report for GCA_003460775.1_ASM346077v1

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Seq: QTVW01000029.1 Ruminococcus sp. AM49-8 AM49-8.Scaf29, whole genome shotgun sequence (45668 bp)
Overview 1 RT 1: 18016-29188 bp Neighborhood of RT #1 [18016, 29217] IscR HDGYP RVT-GII HTH_30 SpaA CollagenBindB SpaA IscR HDGYP Feature: gene Location: 18016-19476 bp Ori: RGF96525.1 Feature: domain Description: IscR Location: 18019-18421 bp Feature: domain Description: IscR Location: 1 801 9-1 8421 bp Feature: domain Description: HDGYP Location: 18718-19465 bp Feature: domain Description: HDGYP Location: 1 871 8-1 9465 bp Feature: gene Location: 19608-19928 bp Feature: gene Location: 20279-21004 bp Ori: RGF96527.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20525-20750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20525-20750 bp Feature: domain Description: HTH_30 Location: 20807-20963 bp Feature: domain Description: HTH_30 Location: 20807-20963 bp Feature: gene Location: 21625-27756 bp Ori: RGF96528.1 Feature: domain Description: SpaA Location: 26077-26281 bp Feature: domain Description: SpaA Location: 26077-26281 bp Feature: domain Description: CollagenBindB Location: 26455-26683 bp Feature: domain Description: CollagenBindB Location: 26455-26683 bp Feature: domain Description: SpaA Location: 26872-27127 bp Feature: domain Description: SpaA Location: 26872-271 27 bp Feature: gene Location: 27769-29217 bp Ori: RGF96529.1 Feature: domain Description: IscR Location: 27772-28171 bp Feature: domain Description: IscR Location: 27772-281 71 bp Feature: domain Description: HDGYP Location: 28387-29188 bp Feature: domain Description: HDGYP Location: 28387-291 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), RVT-GII, HTH_30 (pfam13556), SpaA (pfam17802), CollagenBindB (cl15753)

Seq: QTVW01000025.1 Ruminococcus sp. AM49-8 AM49-8.Scaf25, whole genome shotgun sequence (47574 bp)
Overview 1 RT 1: 14145-18671 bp Neighborhood of RT #1 [14145, 18671] SSB RVT-GII Acetyltransf_7 Feature: gene Location: 14145-14834 bp Ori: RGF96855.1 Feature: domain Description: SSB Location: 14148-14445 bp Feature: domain Description: SSB Location: 14148-14445 bp Feature: gene Location: 15456-15665 bp Feature: gene Location: 15810-17105 bp Ori: RGF96857.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16065-16755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16065-16755 bp Feature: gene Location: 17596-18039 bp Ori: RGF96858.1 Feature: domain Description: Acetyltransf_7 Location: 17695-17938 bp Feature: domain Description: Acetyltransf_7 Location: 17695-17938 bp Feature: gene Location: 18068-18671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB (pfam00436), RVT-GII, Acetyltransf_7 (pfam13508)

Seq: QTVW01000009.1 Ruminococcus sp. AM49-8 AM49-8.Scaf9, whole genome shotgun sequence (94077 bp)
Overview 1 RT 1: 87342-91635 bp Neighborhood of RT #1 [87342, 91635] NapF FrhB_FdhB_N FrhB_FdhB_C WcaA RVT-GII GIIM HTH_32 rve Feature: gene Location: 87342-88463 bp Ori: RGF98762.1 Feature: domain Description: NapF Location: 87351-87531 bp Feature: domain Description: NapF Location: 873 51-8753 1 bp Feature: domain Description: FrhB_FdhB_N Location: 87552-87741 bp Feature: domain Description: FrhB_FdhB_N Location: 87552-87741 bp Feature: domain Description: FrhB_FdhB_C Location: 87792-88233 bp Feature: domain Description: FrhB_FdhB_C Location: 87792-8823 3 bp Feature: gene Location: 88734-88940 bp Ori: RGF98763.1 Feature: domain Description: WcaA Location: 88737-88926 bp Feature: domain Description: WcaA Location: 8873 7-88926 bp Feature: gene Location: 88885-89505 bp Ori: RGF98764.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88894-89143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88894-89143 bp Feature: domain Description: GIIM Note: maturase Location: 89209-89416 bp Feature: domain Description: GIIM Note: maturase Location: 89209-89416 bp Feature: gene Location: 89879-91144 bp Ori: RGF98765.1 Feature: domain Description: HTH_32 Location: 90062-90287 bp Feature: domain Description: HTH_3 2 Location: 90062-90287 bp Feature: domain Description: rve Location: 90365-90710 bp Feature: domain Description: rve Location: 903 65-90710 bp Feature: gene Location: 91438-91635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NapF (COG1145), FrhB_FdhB_N (pfam04422), FrhB_FdhB_C (pfam04432), WcaA (TIGR04017), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), rve (pfam00665)