myRT

myRT report for GCA_003461165.1_ASM346116v1

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Seq: QTWO01000002.1 Ruminococcus sp. AF21-11 AF21-11.Scaf2, whole genome shotgun sequence (300030 bp)
Overview 1 RT 1: 226361-235615 bp Neighborhood of RT #1 [226361, 235623] pfam13191 HTH_24 RVT-Retrons RecQ PRK12553 Feature: gene Location: 226361-228418 bp Ori: RGG53591.1 Feature: domain Description: pfam13191 Location: 226961-227321 bp Feature: domain Description: pfam1 31 91 Location: 226961 -227321 bp Feature: gene Location: 228556-228816 bp Ori: RGG53592.1 Feature: domain Description: HTH_24 Location: 228637-228769 bp Feature: domain Description: HTH_24 Location: 228637-228769 bp Feature: gene Location: 229240-230217 bp Ori: RGG53593.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 229402-229951 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 229402-229951 bp Feature: gene Location: 230688-234158 bp Ori: RGG53594.1 Feature: domain Description: RecQ Location: 230766-232443 bp Feature: domain Description: RecQ Location: 230766-232443 bp Feature: gene Location: 234880-235623 bp Ori: RGG53595.1 Feature: domain Description: PRK12553 Location: 235039-235615 bp Feature: domain Description: PRK1 2553 Location: 235039-23561 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam13191 (AAA_16;AAA ATPase domain), HTH_24 (pfam13412), RVT-Retrons, RecQ (COG0514), PRK12553 (ATP-dependent Clp protease proteolytic subunit; Reviewed)

Seq: QTWO01000032.1 Ruminococcus sp. AF21-11 AF21-11.Scaf32, whole genome shotgun sequence (13772 bp)
Overview 1 RT 1: 1361-13481 bp Neighborhood of RT #1 [1361, 13516] AAA_22 RVT-UG3 RVT-UG8 DDE_Tnp_IS66 DDE_Tnp_IS66_C DUF772 Feature: gene Location: 1361-7726 bp Ori: RGG45851.1 Feature: domain Description: AAA_22 Location: 6635-7049 bp Feature: domain Description: AAA_2 2 Location: 6635-7049 bp Feature: gene Location: 7733-8806 bp Feature: gene Location: 9002-10366 bp Ori: RGG45853.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 9314-9815 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 9314-9815 bp Feature: gene Location: 10553-12541 bp Ori: RGG45854.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 11084-11525 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 11084-1152 5 bp Feature: gene Location: 12616-13011 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12619-12835 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12 619-12 835 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 12853-12976 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 12 853-12 976 bp Feature: gene Location: 13088-13516 bp Feature: domain Description: DUF772 Location: 13268-13481 bp Feature: domain Description: DUF772 Location: 132 68-13481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_22 (pfam13401), RVT-UG3, RVT-UG8, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), DUF772 (pfam05598)