myRT

myRT report for GCA_003461565.1_ASM346156v1

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Seq: QTXI01000004.1 Firmicutes bacterium AF16-15 AF16-15.Scaf4, whole genome shotgun sequence (242458 bp)
Overview 1 RT 1: 59476-66885 bp Neighborhood of RT #1 [59476, 66944] pyru_phos_dikin DUF4368 RVT-GII GIIM HTH_XRE Ere-like Feature: gene Location: 59476-62103 bp Feature: domain Description: pyru_phos_dikin Location: 59485-62056 bp Feature: domain Description: pyru_phos_dikin Location: 59485-62056 bp Feature: gene Location: 62591-62974 bp Feature: domain Description: DUF4368 Location: 62663-62798 bp Feature: domain Description: DUF4368 Location: 62663-62798 bp Feature: gene Location: 63714-65012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63969-64659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63969-64659 bp Feature: domain Description: GIIM Note: maturase Location: 64722-64941 bp Feature: domain Description: GIIM Note: maturase Location: 64722-64941 bp Feature: gene Location: 65255-65614 bp Feature: domain Description: HTH_XRE Location: 65426-65597 bp Feature: domain Description: HTH_XRE Location: 65426-65597 bp Feature: gene Location: 65664-66944 bp Feature: domain Description: Ere-like Location: 65847-66885 bp Feature: domain Description: Ere-like Location: 65847-66885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pyru_phos_dikin (TIGR01828), DUF4368 (pfam14287), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), Ere-like (cd14728)

Seq: QTXI01000019.1 Firmicutes bacterium AF16-15 AF16-15.Scaf19, whole genome shotgun sequence (52408 bp)
Overview 1 RT 1: 9163-14137 bp Neighborhood of RT #1 [9163, 14142] DUF3801 VirD4 RVT_N RVT-GII GIIM VirD4 Maff2 Feature: gene Location: 9163-9633 bp Feature: domain Description: DUF3801 Location: 9229-9586 bp Feature: domain Description: DUF3801 Location: 92 2 9-9586 bp Feature: gene Location: 9630-10283 bp Feature: domain Description: VirD4 Location: 9873-10275 bp Feature: domain Description: VirD4 Location: 9873-102 75 bp Feature: gene Location: 10866-12530 bp Feature: RT Description: RVT_N Location: 10911-11154 bp Feature: RT Description: RVT_N Location: 10911-11154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11199-11850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11199-11850 bp Feature: domain Description: GIIM Note: maturase Location: 11901-12135 bp Feature: domain Description: GIIM Note: maturase Location: 11901-12 135 bp Feature: gene Location: 12644-13834 bp Feature: domain Description: VirD4 Location: 12656-13667 bp Feature: domain Description: VirD4 Location: 12 656-13667 bp Feature: gene Location: 13927-14142 bp Feature: domain Description: Maff2 Location: 13930-14137 bp Feature: domain Description: Maff2 Location: 13930-14137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirD4 (COG3505), Maff2 (pfam12750), DUF3801 (pfam12687)

Seq: QTXI01000002.1 Firmicutes bacterium AF16-15 AF16-15.Scaf2, whole genome shotgun sequence (279576 bp)
Overview 1 RT 1: 145642-149919 bp Neighborhood of RT #1 [145642, 150077] RsuA spore_ylbJ RVT-GII GIIM PRK09098 PRK09098 Feature: gene Location: 145642-146349 bp Feature: domain Description: RsuA Location: 145651-146341 bp Feature: domain Description: RsuA Location: 145651-1463 41 bp Feature: gene Location: 146426-147391 bp Feature: domain Description: spore_ylbJ Location: 146468-147380 bp Feature: domain Description: spore_ylbJ Location: 146468-1473 80 bp Feature: gene Location: 147525-148919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147843-148467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147843 -148467 bp Feature: domain Description: GIIM Note: maturase Location: 148524-148740 bp Feature: domain Description: GIIM Note: maturase Location: 148524-148740 bp Feature: gene Location: 149176-149454 bp Feature: gene Location: 149472-150077 bp Feature: domain Description: PRK09098 Location: 149634-149739 bp Feature: domain Description: PRK09098 Location: 14963 4-14973 9 bp Feature: domain Description: PRK09098 Location: 149745-149919 bp Feature: domain Description: PRK09098 Location: 149745-149919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsuA (COG1187), spore_ylbJ (TIGR02871), RVT-GII, GIIM (pfam08388), PRK09098 (HrpE/YscL family type III secretion apparatus protein)

Seq: QTXI01000009.1 Firmicutes bacterium AF16-15 AF16-15.Scaf9, whole genome shotgun sequence (116860 bp)
Overview 1 RT 1: 15193-20908 bp 2 RT 2: 110615-115675 bp Neighborhood of RT #1 [15193, 20908] ABC_trans_CmpB RVT-DGRs Neighborhood of RT #2 [110615, 115743] COG3533 EcoEI_R_C RVT-GII Acetyltransf_1 Feature: gene Location: 15193-15621 bp Feature: domain Description: ABC_trans_CmpB Location: 15301-15538 bp Feature: domain Description: ABC_trans_CmpB Location: 15301-15538 bp Feature: gene Location: 15624-16325 bp Feature: gene Location: 16285-17541 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16576-17167 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16576-17167 bp Feature: gene Location: 17931-19574 bp Feature: gene Location: 19637-20908 bp Feature: gene Location: 110615-112651 bp Feature: domain Description: COG3533 Location: 110651-112640 bp Feature: domain Description: COG3533 Location: 110651-11264 0 bp Feature: gene Location: 112705-113148 bp Feature: domain Description: EcoEI_R_C Location: 112720-113080 bp Feature: domain Description: EcoEI_R_C Location: 112720-113080 bp Feature: gene Location: 113466-114761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113721-114411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113721-114 4 11 bp Feature: gene Location: 114851-115030 bp Feature: gene Location: 115270-115743 bp Feature: domain Description: Acetyltransf_1 Location: 115417-115675 bp Feature: domain Description: Acetyltransf_1 Location: 1154 17-115675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_trans_CmpB (pfam06541), RVT-DGRs, COG3533 (Uncharacterized conserved protein, DUF1680 family ), EcoEI_R_C (pfam08463), RVT-GII, Acetyltransf_1 (pfam00583)